Wardn HubTrusted MCP server directory.

Registry

  • MCP Servers
  • Skills
  • Categories

Resources

  • API docs
  • Score method

Contribute

  • Submit server
  • Advertise
© 2026 Wardn Hub
Wardn Hub
MCP ServersSkillsCategoriesAPI docsSubmit server
Submit server
skills/FreedomIntelligence/OpenClaw-Medical-Skills
Source

FreedomIntelligence/OpenClaw-Medical-SkillsOfficial

Skills
500
#SkillSourceInstalls
1finishing-a-development-branchOfficialS · 99Use when implementation is complete, all tests pass, and you need to decide how to integrate the work - guides completion of development work by presenting structured options for merge, PR, or cleanupVersion ControlFreedomIntelligence/OpenClaw-Medical-Skills · 1 installsFreedomIntelligence/OpenClaw-Medical-Skills1
2adaptyvOfficialA- · 68Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
3adhd-daily-plannerOfficialS · 99Time-blind friendly planning, executive function support, and daily structure for ADHD brains. Specializes in realistic time estimation, dopamine-aware task design, and building systems that actually work for neurodivergent minds.Workplace & ProductivityFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
4aeonOfficialA · 79This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
5agent-browserOfficialA · 79Browse the web for any task — research topics, read articles, interact with web apps, fill forms, take screenshots, extract data, and test web pages. Use whenever a browser would be useful, not just when the user explicitly asks.Browser AutomationFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
6ai-analyzerOfficialS · 99AI驱动的综合健康分析系统,整合多维度健康数据、识别异常模式、预测健康风险、提供个性化建议。支持智能问答和AI健康报告生成。Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
7alphafold-databaseOfficialB · 47Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
8anndataOfficialA+ · 96This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with scanpy/scverse tools.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
9arxiv-searchOfficialB · 38Search arXiv physics, math, and computer science preprints using natural language queries. Powered by Valyu semantic search.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
10benchling-integrationOfficialA · 79Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
11bgpt-paper-searchOfficialA · 79Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews, evidence synthesis, and finding experimental details not available in abstracts alone.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
12binder-designOfficialA+ · 92Guidance for choosing the right protein binder design tool. Use this skill when: (1) Deciding between BoltzGen, BindCraft, or RFdiffusion, (2) Planning a binder design campaign, (3) Understanding trade-offs between different approaches, (4) Selecting tools for specific target types. For specific tool parameters, use the individual tool skills (boltzgen, bindcraft, rfdiffusion, etc.).Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
13binding-characterizationOfficialS · 100Guidance for SPR and BLI binding characterization experiments. Use when: (1) Planning binding kinetics experiments, (2) Troubleshooting poor/no binding signal, (3) Interpreting kinetic data artifacts, (4) Choosing between SPR vs BLI platforms.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
14bindingdb-databaseOfficialS · 100Query BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50). Search by target (UniProt ID), compound (SMILES/name), or pathogen. Essential for drug discovery, lead optimization, polypharmacology analysis, and structure-activity relationship (SAR) studies.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
15bio-admet-predictionOfficialA- · 72Predicts ADMET properties using ADMETlab 3.0 API or DeepChem models. Estimates bioavailability, CYP inhibition, hERG liability, and 119 toxicity endpoints with uncertainty quantification. Filters for PAINS and other structural alerts. Use when filtering compounds for drug-likeness or prioritizing leads by predicted safety.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
16bio-alignment-ioOfficialS · 99Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis. Use when reading, writing, or converting alignment file formats.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
17bio-alignment-msa-parsingOfficialS · 99Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis. Use when parsing or manipulating multiple sequence alignments.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
18bio-alignment-msa-statisticsOfficialS · 99Calculate alignment statistics including sequence identity, conservation scores, substitution matrices, and similarity metrics. Use when comparing alignment quality, measuring sequence divergence, and analyzing evolutionary patterns.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
19bio-alignment-pairwiseOfficialS · 99Perform pairwise sequence alignment using Biopython Bio.Align.PairwiseAligner. Use when comparing two sequences, finding optimal alignments, scoring similarity, and identifying local or global matches between DNA, RNA, or protein sequences.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
20bio-atac-seq-atac-peak-callingOfficialA · 79Call accessible chromatin regions from ATAC-seq data using MACS3 with ATAC-specific parameters. Use when identifying open chromatin regions from aligned ATAC-seq BAM files, different from ChIP-seq peak calling.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
21bio-atac-seq-atac-qcOfficialC · 2Quality control metrics for ATAC-seq data including fragment size distribution, TSS enrichment, FRiP, and library complexity. Use when assessing ATAC-seq library quality before or after peak calling to identify problematic samples.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
22bio-atac-seq-differential-accessibilityOfficialS · 99Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2. Use when comparing chromatin accessibility between treatment groups, cell types, or developmental stages in ATAC-seq experiments.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
23bio-atac-seq-footprintingOfficialA · 75Detect transcription factor binding sites through footprinting analysis in ATAC-seq data using TOBIAS. Use when identifying TF occupancy patterns within accessible regions, as TF binding protects DNA from Tn5 cutting.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
24bio-atac-seq-motif-deviationOfficialS · 99Analyze transcription factor motif accessibility variability using chromVAR. Use when identifying which TF motifs show variable accessibility across samples or conditions in ATAC-seq data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
25bio-atac-seq-nucleosome-positioningOfficialA · 79Extract nucleosome positions from ATAC-seq data using NucleoATAC, ATACseqQC, and fragment analysis. Use when analyzing chromatin organization, identifying nucleosome-free regions at promoters, or characterizing nucleosome occupancy patterns from ATAC-seq fragment size distributions.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
26bio-basecallingOfficialS · 99Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. Covers model selection, GPU acceleration, modified base detection, and quality filtering. Use when processing raw Nanopore data before alignment. Guppy is deprecated; use Dorado for all new analyses.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
27bio-batch-processingOfficialS · 99Process multiple sequence files in batch using Biopython. Use when working with many files, merging/splitting sequences, or automating file operations across directories.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
28bio-causal-genomics-colocalization-analysisOfficialA+ · 95Test whether two traits share a causal variant at a genomic locus using Bayesian colocalization with coloc. Computes posterior probabilities for shared vs distinct causal variants between GWAS and eQTL signals. Use when determining if a GWAS signal and an eQTL share the same causal variant.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
29bio-causal-genomics-fine-mappingOfficialS · 99Identify likely causal variants within GWAS loci using SuSiE for sum of single effects regression and FINEMAP for shotgun stochastic search. Computes posterior inclusion probabilities and credible sets to prioritize variants for functional follow-up. Use when narrowing GWAS association signals to candidate causal variants or building credible sets for functional validation.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
30bio-causal-genomics-mediation-analysisOfficialS · 99Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package. Tests whether gene expression, methylation, or other molecular phenotypes mediate the effect of genetic variants on disease. Use when testing whether a molecular phenotype mediates the genotype-to-phenotype relationship.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
31bio-causal-genomics-mendelian-randomizationOfficialS · 99Estimate causal effects between exposures and outcomes using genetic variants as instrumental variables with TwoSampleMR. Implements IVW, MR-Egger, weighted median, and MR-PRESSO methods for robust causal inference from GWAS summary statistics. Use when testing whether an exposure causally affects an outcome using genetic instruments.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
32bio-causal-genomics-pleiotropy-detectionOfficialA · 79Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directional pleiotropy, and Steiger filtering for variant directionality. Use when validating MR results, detecting pleiotropic instruments, or running sensitivity analyses for causal inference.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
33bio-cfdna-preprocessingOfficialC+ · 24Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio. Applies cfDNA-specific quality thresholds and fragment length filtering. Use when processing plasma cfDNA sequencing data before downstream analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
34bio-chipseq-differential-bindingOfficialA+ · 95Differential binding analysis using DiffBind. Compare ChIP-seq peaks between conditions with statistical rigor. Requires replicate samples. Outputs differentially bound regions with fold changes and p-values. Use when comparing ChIP-seq binding between conditions.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
35bio-chipseq-motif-analysisOfficialA- · 71De novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP. Identify transcription factor binding motifs in ChIP-seq, ATAC-seq, or other genomic peak data. Use when finding enriched DNA motifs in peak sequences.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
36bio-chipseq-peak-annotationOfficialS · 99Annotate ChIP-seq peaks to genomic features and genes using ChIPseeker. Assign peaks to promoters, exons, introns, and intergenic regions. Find nearest genes and calculate distance to TSS. Generate annotation plots and statistics. Use when annotating ChIP-seq peaks to genomic features.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
37bio-chipseq-peak-callingOfficialS · 99ChIP-seq peak calling using MACS3 (or MACS2). Call narrow peaks for transcription factors or broad peaks for histone modifications. Supports input control, fragment size modeling, and various output formats including narrowPeak and broadPeak BED files. Use when calling peaks from ChIP-seq alignments.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
38bio-chipseq-qcOfficialS · 99ChIP-seq quality control metrics including FRiP (Fraction of Reads in Peaks), cross-correlation analysis (NSC/RSC), library complexity, and IDR (Irreproducibility Discovery Rate) for replicate concordance. Use to assess experiment quality before downstream analysis. Use when assessing ChIP-seq data quality metrics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
39bio-chipseq-super-enhancersOfficialA · 79Identifies super-enhancers from H3K27ac ChIP-seq data using ROSE and related tools. Use when studying cell identity genes, cancer-associated regulatory elements, or master transcription factor binding regions that cluster into large enhancer domains.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
40bio-chipseq-visualizationOfficialS · 99Visualize ChIP-seq data using deepTools, Gviz, and ChIPseeker. Create heatmaps, profile plots, and genome browser tracks. Visualize signal around peaks, TSS, or custom regions. Use when visualizing ChIP-seq signal and peaks.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
41bio-clinical-databases-clinvar-lookupOfficialA- · 72Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. Use when determining clinical significance of variants for diagnostic or research purposes.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
42bio-clinical-databases-dbsnp-queriesOfficialS · 99Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. Use when mapping between rsIDs and genomic coordinates or retrieving basic variant information.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
43bio-clinical-databases-gnomad-frequenciesOfficialA · 79Query gnomAD for population allele frequencies to assess variant rarity. Use when filtering variants by population frequency for rare disease analysis or determining if a variant is common in the general population.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
44bio-clinical-databases-hla-typingOfficialS · 99Call HLA alleles from NGS data using OptiType, HLA-HD, or arcasHLA for immunogenomics applications. Use when determining HLA genotype for transplant matching, neoantigen prediction, or pharmacogenomic screening.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
45bio-clinical-databases-myvariant-queriesOfficialS · 99Query myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request. Use when annotating variants with clinical and population data from multiple sources simultaneously.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
46bio-clinical-databases-pharmacogenomicsOfficialB+ · 60Query PharmGKB and CPIC for drug-gene interactions, pharmacogenomic annotations, and dosing guidelines. Use when predicting drug response from genetic variants or implementing clinical pharmacogenomics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
47bio-clinical-databases-polygenic-riskOfficialA- · 71Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics. Use when predicting disease risk from genome-wide genetic variants.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
48bio-clinical-databases-somatic-signaturesOfficialS · 99Extract and analyze mutational signatures from somatic variants using SigProfiler or MutationalPatterns to characterize mutagenic processes. Use when identifying DNA damage mechanisms or etiology in cancer genomes.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
49bio-clinical-databases-tumor-mutational-burdenOfficialS · 99Calculate tumor mutational burden from panel or WES data with proper normalization and clinical thresholds. Use when assessing immunotherapy eligibility or characterizing tumor immunogenicity.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
50bio-clinical-databases-variant-prioritizationOfficialB · 49Filter and prioritize variants by pathogenicity, population frequency, and clinical evidence for rare disease analysis. Use when identifying candidate disease-causing variants from exome or genome sequencing.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
51bio-compressed-filesOfficialS · 99Read and write compressed sequence files (gzip, bzip2, BGZF) using Biopython. Use when working with .gz or .bz2 sequence files. Use BGZF for indexable compressed files.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
52bio-consensus-sequencesOfficialB · 49Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. Use when creating sample-specific reference sequences or reconstructing haplotypes.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
53bio-copy-number-cnv-annotationOfficialS · 99Annotate CNVs with genes, pathways, and clinical significance. Use when interpreting CNV calls or identifying affected genes from copy number analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
54bio-copy-number-cnv-visualizationOfficialS · 99Visualize copy number profiles, segments, and compare across samples. Create publication-quality plots of CNV data from CNVkit, GATK, or other callers. Use when creating genome-wide CNV plots, sample heatmaps, or chromosome-level visualizations.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
55bio-copy-number-cnvkit-analysisOfficialA- · 71Detect copy number variants from targeted/exome sequencing using CNVkit. Supports tumor-normal pairs, tumor-only, and germline CNV calling. Use when detecting CNVs from WES or targeted panel sequencing data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
56bio-copy-number-gatk-cnvOfficialA · 79Call copy number variants using GATK best practices workflow. Supports both somatic (tumor-normal) and germline CNV detection from WGS or WES data. Use when following GATK best practices or integrating CNV calling with other GATK variant pipelines.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
57bio-crispr-screens-base-editing-analysisOfficialS · 99Analyzes base editing and prime editing outcomes including editing efficiency, bystander edits, and indel frequencies. Use when quantifying CRISPR base editor results, comparing ABE vs CBE efficiency, or assessing prime editing fidelity.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
58bio-crispr-screens-batch-correctionOfficialS · 99Batch effect correction for CRISPR screens. Covers normalization across batches, technical replicate handling, and batch-aware analysis. Use when combining screens from multiple batches or correcting systematic technical variation.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
59bio-crispr-screens-crispresso-editingOfficialS · 99CRISPResso2 for analyzing CRISPR gene editing outcomes. Quantifies indels, HDR efficiency, and generates comprehensive editing reports. Use when analyzing amplicon sequencing data from CRISPR editing experiments to assess editing efficiency.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
60bio-crispr-screens-hit-callingOfficialS · 99Statistical methods for calling hits in CRISPR screens. Covers MAGeCK, BAGEL2, drugZ, and custom approaches for identifying essential and resistance genes. Use when identifying significant genes from screen count data after QC passes.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
61bio-crispr-screens-jacks-analysisOfficialA · 79JACKS (Joint Analysis of CRISPR/Cas9 Knockout Screens) for modeling sgRNA efficacy and gene essentiality. Use when analyzing multiple CRISPR screens simultaneously or when accounting for variable sgRNA efficiency across experiments.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
62bio-crispr-screens-library-designOfficialS · 99CRISPR library design for genetic screens. Covers sgRNA selection, library composition, control design, and oligo ordering. Use when designing custom sgRNA libraries for knockout, activation, or interference screens.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
63bio-crispr-screens-mageck-analysisOfficialS · 99MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout) for pooled CRISPR screen analysis. Covers count normalization, gene ranking, and pathway analysis. Use when identifying essential genes, drug targets, or resistance mechanisms from dropout or enrichment screens.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
64bio-crispr-screens-screen-qcOfficialS · 99Quality control for pooled CRISPR screens. Covers library representation, read distribution, replicate correlation, and essential gene recovery. Use when assessing screen quality before hit calling or diagnosing poor screen performance.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
65bio-ctdna-mutation-detectionOfficialC+ · 23Detects somatic mutations in circulating tumor DNA using variant callers optimized for low allele fractions with UMI-based error suppression. Reliably detects mutations at VAF above 0.5 percent using consensus-based approaches. Use when identifying tumor mutations from plasma DNA or tracking specific variants.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
66bio-de-deseq2-basicsOfficialA · 79Perform differential expression analysis using DESeq2 in R/Bioconductor. Use for analyzing RNA-seq count data, creating DESeqDataSet objects, running the DESeq workflow, and extracting results with log fold change shrinkage. Use when performing DE analysis with DESeq2.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
67bio-de-edger-basicsOfficialA+ · 95Perform differential expression analysis using edgeR in R/Bioconductor. Use for analyzing RNA-seq count data with the quasi-likelihood F-test framework, creating DGEList objects, normalization, dispersion estimation, and statistical testing. Use when performing DE analysis with edgeR.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
68bio-de-resultsOfficialA+ · 91Extract, filter, annotate, and export differential expression results from DESeq2 or edgeR. Use for identifying significant genes, applying multiple testing corrections, adding gene annotations, and preparing results for downstream analysis. Use when filtering and exporting DE analysis results.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
69bio-de-visualizationOfficialS · 99Visualize differential expression results using DESeq2/edgeR built-in functions. Covers plotMA, plotDispEsts, plotCounts, plotBCV, sample distance heatmaps, and p-value histograms. Use when visualizing differential expression results.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
70bio-differential-expression-batch-correctionOfficialS · 99Remove batch effects from RNA-seq data using ComBat, ComBat-Seq, limma removeBatchEffect, and SVA for unknown batch variables. Use when correcting batch effects in expression data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
71bio-differential-expression-timeseries-deOfficialA+ · 95Analyze time-series RNA-seq data using limma voom with splines, maSigPro, and ImpulseDE2. Identify genes with dynamic expression patterns. Use when analyzing time-series or longitudinal expression data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
72bio-differential-splicingOfficialA · 79Detects differential alternative splicing between conditions using rMATS-turbo (BAM-based) or SUPPA2 diffSplice (TPM-based). Reports events with FDR-corrected significance and delta PSI effect sizes. Use when comparing splicing patterns between treatment groups, tissues, or disease states.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
73bio-epidemiological-genomics-amr-surveillanceOfficialC+ · 24Detect and track antimicrobial resistance genes using AMRFinderPlus and ResFinder with epidemiological context. Monitor resistance trends and identify emerging resistance patterns. Use when screening genomes for AMR genes or tracking resistance in surveillance programs.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
74bio-epidemiological-genomics-pathogen-typingOfficialA · 79Perform multi-locus sequence typing (MLST), core genome MLST, and SNP-based strain typing for bacterial isolate characterization using mlst and chewBBACA. Use when identifying strain types, tracking outbreak clones, or characterizing bacterial isolates.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
75bio-epidemiological-genomics-phylodynamicsOfficialA- · 71Construct time-scaled phylogenies and infer evolutionary dynamics using TreeTime and BEAST2 for outbreak analysis. Estimate divergence times, molecular clock rates, and ancestral states. Use when dating outbreak origins, estimating transmission rates, or building time-calibrated trees.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
76bio-epidemiological-genomics-transmission-inferenceOfficialA · 79Infer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. Estimate who-infected-whom from genomic and epidemiological data. Use when investigating outbreak transmission chains or identifying superspreaders.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
77bio-epidemiological-genomics-variant-surveillanceOfficialA · 79Assign pathogen lineages and track variants using Nextclade and pangolin for viral surveillance. Monitor variant prevalence and identify emerging variants of concern. Use when classifying viral sequences, tracking lineage dynamics, or monitoring for variants of concern.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
78bio-fastq-qualityOfficialA- · 71Work with FASTQ quality scores using Biopython. Use when analyzing read quality, filtering by quality, trimming low-quality bases, or generating quality reports.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
79bio-filter-sequencesOfficialA · 79Filter and select sequences by criteria (length, ID, GC content, patterns) using Biopython. Use when subsetting sequences, removing unwanted records, or selecting by specific criteria.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
80bio-flow-cytometry-bead-normalizationOfficialS · 99Bead-based normalization for CyTOF and high-parameter flow cytometry. Covers EQ bead normalization, signal drift correction, and batch normalization. Use when correcting instrument drift in CyTOF or harmonizing data across batches.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
81bio-flow-cytometry-clustering-phenotypingOfficialS · 99Unsupervised clustering and cell type identification for flow/mass cytometry. Covers FlowSOM, Phenograph, and CATALYST workflows. Use when discovering cell populations in high-dimensional cytometry data without predefined gates.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
82bio-flow-cytometry-compensation-transformationOfficialS · 99Spillover compensation and data transformation for flow cytometry. Covers compensation matrix calculation, application, and biexponential/arcsinh transforms. Use when correcting spectral overlap between fluorophores or transforming data for analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
83bio-flow-cytometry-cytometry-qcOfficialS · 99Comprehensive quality control for flow cytometry and CyTOF data. Covers flow rate stability, signal drift, margin events, dead cell exclusion, and batch QC. Use when assessing acquisition quality or identifying problematic samples before analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
84bio-flow-cytometry-differential-analysisOfficialS · 99Differential abundance and state analysis for cytometry data. Compare cell populations between conditions using statistical methods. Use when testing for significant changes in cell frequencies or marker expression between groups.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
85bio-flow-cytometry-doublet-detectionOfficialA+ · 91Detect and remove doublets from flow and mass cytometry data. Covers FSC/SSC gating and computational doublet detection methods. Use when filtering out cell aggregates before clustering or quantitative analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
86bio-flow-cytometry-fcs-handlingOfficialS · 99Read and manipulate Flow Cytometry Standard (FCS) files. Covers loading data, accessing parameters, and basic data exploration. Use when loading and inspecting flow or mass cytometry data before preprocessing.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
87bio-flow-cytometry-gating-analysisOfficialS · 99Manual and automated gating for defining cell populations in flow cytometry. Covers rectangular, polygon, and data-driven gates. Use when identifying cell populations through hierarchical gating strategies.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
88bio-format-conversionOfficialS · 99Convert between sequence file formats (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. Use when changing file formats or preparing data for different tools.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
89bio-fragment-analysisOfficialA · 79Analyzes cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin. Extracts nucleosome positioning patterns, fragment ratios, and DELFI-style fragmentation profiles for cancer detection. Use when leveraging fragment patterns for tumor detection or tissue-of-origin analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
90bio-gatk-variant-callingOfficialA- · 71Variant calling with GATK HaplotypeCaller following best practices. Covers germline SNP/indel calling, GVCF workflow for cohorts, joint genotyping, and variant quality score recalibration (VQSR). Use when calling variants with GATK HaplotypeCaller.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
91bio-genome-engineering-base-editing-designOfficialS · 99Design guides for cytosine and adenine base editing using editing window optimization and BE-Hive outcome prediction. Select optimal positions for C-to-T or A-to-G conversions without double-strand breaks. Use when designing base editor experiments for precise nucleotide changes.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
92bio-genome-engineering-grna-designOfficialA+ · 95Design guide RNAs for CRISPR-Cas9/Cas12a experiments using CRISPRscan and local scoring algorithms. Score guides for on-target activity using Rule Set 2 and Azimuth models. Use when designing sgRNAs for gene knockout, activation, or repression experiments.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
93bio-genome-engineering-hdr-template-designOfficialS · 99Design homology-directed repair donor templates for CRISPR knock-ins using primer3-py. Create ssODN, dsDNA, or plasmid templates with optimized homology arms. Use when designing donor templates for precise insertions, tagging, or allele replacement.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
94bio-genome-engineering-off-target-predictionOfficialA · 79Predict CRISPR off-target sites using Cas-OFFinder and CFD scoring algorithms. Identify potential unintended cleavage sites genome-wide and assess guide specificity. Use when evaluating guide RNA specificity or selecting guides with minimal off-target risk.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
95bio-genome-engineering-prime-editing-designOfficialS · 99Design pegRNAs for prime editing using PrimeDesign algorithms. Generate spacer, PBS, and RT template sequences for precise genomic modifications without double-strand breaks. Use when designing prime editing experiments for precise insertions, deletions, or point mutations.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
96bio-hi-c-analysis-compartment-analysisOfficialS · 99Detect A/B compartments from Hi-C data using cooltools and eigenvector decomposition. Identify active (A) and inactive (B) chromatin compartments from contact matrices. Use when identifying A/B compartments from Hi-C data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
97bio-hi-c-analysis-contact-pairsOfficialS · 99Process Hi-C read pairs using pairtools. Parse alignments, filter duplicates, classify pairs, and generate contact statistics from Hi-C sequencing data. Use when processing raw Hi-C read pairs.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
98bio-hi-c-analysis-hic-data-ioOfficialS · 99Load, convert, and manipulate Hi-C contact matrices using cooler format. Read .cool/.mcool files, convert from .hic format, access matrix data, and export to different formats. Use when loading or converting Hi-C contact matrices.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
99bio-hi-c-analysis-hic-differentialOfficialS · 99Compare Hi-C contact matrices between conditions to identify differential chromatin interactions. Compute log2 fold changes, statistical significance, and visualize differential contact maps. Use when comparing Hi-C contacts between conditions.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
100bio-hi-c-analysis-hic-visualizationOfficialS · 99Visualize Hi-C contact matrices, TADs, loops, and genomic features using matplotlib, cooltools, and HiCExplorer. Create triangle plots, virtual 4C, and multi-track figures. Use when visualizing contact matrices or genomic features.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
101bio-hi-c-analysis-loop-callingOfficialS · 99Detect chromatin loops and point interactions from Hi-C data using cooltools, chromosight, and HiCCUPS-like methods. Identify CTCF-mediated loops and enhancer-promoter contacts. Use when detecting chromatin loops from Hi-C data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
102bio-hi-c-analysis-matrix-operationsOfficialS · 99Balance, normalize, and transform Hi-C contact matrices using cooler and cooltools. Apply iterative correction (ICE), compute expected values, and generate observed/expected matrices. Use when normalizing or transforming Hi-C matrices.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
103bio-hi-c-analysis-tad-detectionOfficialA- · 70Call topologically associating domains (TADs) from Hi-C data using insulation score, HiCExplorer, and other methods. Identify domain boundaries and hierarchical domain structure. Use when calling TADs from Hi-C insulation scores.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
104bio-imaging-mass-cytometry-cell-segmentationOfficialC+ · 23Cell segmentation from multiplexed tissue images. Covers deep learning (Cellpose, Mesmer) and classical approaches for nuclear and whole-cell segmentation. Use when extracting single-cell data from IMC or MIBI images after preprocessing.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
105bio-imaging-mass-cytometry-data-preprocessingOfficialS · 99Load and preprocess imaging mass cytometry (IMC) and MIBI data. Covers MCD/TIFF handling, hot pixel removal, and image normalization. Use when starting IMC analysis from raw MCD files or preparing images for segmentation.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
106bio-imaging-mass-cytometry-interactive-annotationOfficialS · 99Interactive cell type annotation for IMC data. Covers napari-based annotation, marker-guided labeling, training data generation, and annotation validation. Use when manually annotating cell types for training classifiers or validating automated phenotyping results.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
107bio-imaging-mass-cytometry-phenotypingOfficialA · 79Cell type assignment from marker expression in IMC data. Covers manual gating, clustering, and automated classification approaches. Use when assigning cell types to segmented IMC cells based on protein marker expression or when phenotyping cells in multiplexed imaging data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
108bio-imaging-mass-cytometry-quality-metricsOfficialS · 99Quality metrics for IMC data including signal-to-noise, channel correlation, tissue integrity, and acquisition QC. Use when assessing data quality before analysis or troubleshooting problematic acquisitions.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
109bio-imaging-mass-cytometry-spatial-analysisOfficialS · 99Spatial analysis of cell neighborhoods and interactions in IMC data. Covers neighbor graphs, spatial statistics, and interaction testing. Use when analyzing spatial relationships between cell types, testing for neighborhood enrichment, or identifying cell-cell interaction patterns in imaging mass cytometry data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
110bio-immunoinformatics-epitope-predictionOfficialB- · 34Predict B-cell and T-cell epitopes using BepiPred, IEDB tools, and structure-based methods for vaccine and antibody design. Identify immunogenic regions in antigens. Use when designing vaccines, mapping antibody binding sites, or predicting immunogenic peptides.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
111bio-immunoinformatics-immunogenicity-scoringOfficialS · 99Score and prioritize neoantigens and epitopes for immunogenicity using multi-factor models combining MHC binding, processing, expression, and sequence features. Rank candidates for vaccine design. Use when prioritizing epitopes for vaccine development or identifying the most immunogenic neoantigens.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
112bio-immunoinformatics-mhc-binding-predictionOfficialA- · 72Predict peptide-MHC class I and II binding affinity using MHCflurry and NetMHCpan neural network models. Identify potential T-cell epitopes from protein sequences. Use when predicting MHC binding for vaccine design or neoantigen identification.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
113bio-immunoinformatics-neoantigen-predictionOfficialA · 79Identify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy. Predict mutant peptides that bind patient HLA and may elicit T-cell responses. Use when identifying vaccine targets or checkpoint inhibitor response biomarkers from tumor sequencing data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
114bio-immunoinformatics-tcr-epitope-bindingOfficialA · 75Predict TCR-epitope specificity using ERGO-II and deep learning models for T-cell receptor antigen recognition. Match TCRs to their cognate epitopes or predict TCR targets. Use when analyzing TCR repertoire specificity or identifying antigen-reactive T-cells.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
115bio-isoform-switchingOfficialS · 99Analyzes isoform switching events and functional consequences using IsoformSwitchAnalyzeR. Predicts protein domain changes, NMD sensitivity, ORF alterations, and coding potential shifts between conditions. Use when investigating how splicing changes affect protein function.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
116bio-long-read-sequencing-clair3-variantsOfficialA · 75Deep learning-based variant calling from long reads using Clair3 for SNPs and small indels. Use when calling germline variants from ONT or PacBio alignments, particularly when high accuracy is needed for clinical or research applications.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
117bio-long-read-sequencing-isoseq-analysisOfficialA- · 74Analyze PacBio Iso-Seq data for full-length isoform discovery and quantification. Use when characterizing transcript diversity or identifying novel splice variants.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
118bio-long-read-sequencing-nanopore-methylationOfficialS · 99Calls DNA methylation from Oxford Nanopore sequencing data using signal-level analysis. Use when detecting 5mC or 6mA modifications directly from nanopore reads without bisulfite conversion.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
119bio-longitudinal-monitoringOfficialA · 79Tracks ctDNA dynamics over time for treatment response monitoring using serial liquid biopsy samples. Analyzes tumor fraction trends, mutation clearance kinetics, and defines molecular response criteria. Use when monitoring patients during therapy or detecting molecular relapse before clinical progression.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
120bio-longread-alignmentOfficialS · 99Align long reads using minimap2 for Oxford Nanopore and PacBio data. Supports various presets for different read types and applications. Use when aligning ONT or PacBio reads to a reference genome for variant calling, SV detection, or coverage analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
121bio-longread-medakaOfficialA · 79Polish assemblies and call variants from Oxford Nanopore data using medaka. Uses neural networks trained on specific basecaller versions. Use when improving ONT-only assemblies or calling variants from Nanopore data without short-read polishing.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
122bio-longread-qcOfficialA- · 71Quality control for long-read sequencing data using NanoPlot, NanoStat, and chopper. Generate QC reports, filter reads by length and quality, and visualize read characteristics. Use when assessing ONT or PacBio run quality or filtering reads before assembly or alignment.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
123bio-longread-structural-variantsOfficialS · 99Detect structural variants from long-read alignments using Sniffles, cuteSV, and SVIM. Use when detecting deletions, insertions, inversions, translocations, or complex rearrangements from ONT or PacBio data, especially those missed by short-read methods.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
124bio-metabolomics-lipidomicsOfficialS · 99Specialized lipidomics analysis for lipid identification, quantification, and pathway interpretation. Covers LC-MS lipidomics with LipidSearch, MS-DIAL, and LipidMaps annotation. Use when analyzing lipid classes, chain composition, or lipid-specific pathways.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
125bio-metabolomics-metabolite-annotationOfficialA · 75Metabolite identification from m/z and retention time. Covers database matching, MS/MS spectral matching, and confidence level assignment. Use when assigning compound identities to detected features in untargeted metabolomics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
126bio-metabolomics-msdial-preprocessingOfficialA+ · 95MS-DIAL-based metabolomics preprocessing as alternative to XCMS. Covers peak detection, alignment, annotation, and export for downstream analysis. Use when processing MS-DIAL output files for R/Python analysis or when preferring GUI-based preprocessing.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
127bio-metabolomics-normalization-qcOfficialS · 99Quality control and normalization for metabolomics data. Covers QC-based correction, batch effect removal, and data transformation methods. Use when correcting technical variation in metabolomics data before statistical analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
128bio-metabolomics-pathway-mappingOfficialS · 99Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Perform pathway enrichment and topology analysis. Use when interpreting metabolomics results in the context of biochemical pathways.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
129bio-metabolomics-statistical-analysisOfficialS · 99Statistical analysis for metabolomics data. Covers univariate testing, multivariate methods (PCA, PLS-DA), and biomarker discovery. Use when identifying differentially abundant metabolites or building classification models.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
130bio-metabolomics-targeted-analysisOfficialA+ · 91Targeted metabolomics analysis using MRM/SRM with standard curves. Covers absolute quantification, method validation, and quality assessment. Use when quantifying specific metabolites using calibration curves and internal standards.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
131bio-metabolomics-xcms-preprocessingOfficialS · 99XCMS3 workflow for LC-MS/MS metabolomics preprocessing. Covers peak detection, retention time alignment, correspondence (grouping), and gap filling. Use when processing raw LC-MS data into a feature table for untargeted metabolomics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
132bio-metagenomics-abundanceOfficialS · 99Species abundance estimation using Bracken with Kraken2 output. Redistributes reads from higher taxonomic levels to species for more accurate estimates. Use when accurate species-level abundances are needed from Kraken2 classification output.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
133bio-metagenomics-amr-detectionOfficialA- · 67Detect antimicrobial resistance genes using AMRFinderPlus, ResFinder, and CARD. Screen isolates and metagenomes for resistance determinants. Use when characterizing resistance profiles in clinical isolates, surveillance samples, or metagenomic data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
134bio-metagenomics-functional-profilingOfficialS · 99Profile functional potential of metagenomes using HUMAnN3 and similar tools. Use when obtaining pathway abundances, gene family counts, or functional annotations from metagenomic data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
135bio-metagenomics-krakenOfficialS · 99Taxonomic classification of metagenomic reads using Kraken2. Fast k-mer based classification against RefSeq database. Use when performing initial taxonomic classification of shotgun metagenomic reads before abundance estimation with Bracken.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
136bio-metagenomics-metaphlanOfficialS · 99Marker gene-based taxonomic profiling using MetaPhlAn 4. Provides accurate species-level relative abundances using clade-specific markers. Use when accurate taxonomic profiling is needed and computational resources are limited, or for comparison with HMP/other MetaPhlAn studies.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
137bio-metagenomics-strain-trackingOfficialA · 75Track bacterial strains using MASH, sourmash, fastANI, and inStrain. Compare genomes, detect contamination, and monitor strain-level variation. Use when needing sub-species resolution for outbreak tracking, transmission analysis, or within-host strain dynamics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
138bio-metagenomics-visualizationOfficialS · 99Visualize metagenomic profiles using R (phyloseq, microbiome) and Python (matplotlib, seaborn). Create stacked bar plots, heatmaps, PCA plots, and diversity analyses. Use when creating publication-quality figures from MetaPhlAn, Bracken, or other taxonomic profiling output.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
139bio-methylation-based-detectionOfficialA · 79Analyzes cfDNA methylation patterns for cancer detection using cfMeDIP-seq or bisulfite sequencing with MethylDackel. Identifies cancer-specific methylation signatures and performs tissue-of-origin deconvolution. Use when using methylation biomarkers for early cancer detection or minimal residual disease.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
140bio-methylation-bismark-alignmentOfficialS · 99Bisulfite sequencing read alignment using Bismark with bowtie2/hisat2. Handles genome preparation and produces BAM files with methylation information. Use when aligning WGBS, RRBS, or other bisulfite-converted sequencing reads to a reference genome.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
141bio-methylation-callingOfficialS · 99Extract methylation calls from Bismark BAM files using bismark_methylation_extractor. Generates per-cytosine reports for CpG, CHG, and CHH contexts. Use when extracting methylation levels from aligned bisulfite sequencing data for downstream analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
142bio-methylation-dmr-detectionOfficialS · 99Differentially methylated region (DMR) detection using methylKit tiles, bsseq BSmooth, and DMRcate. Use when identifying contiguous genomic regions with methylation differences between experimental conditions or cell types.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
143bio-methylation-methylkitOfficialA+ · 91DNA methylation analysis with methylKit in R. Import Bismark coverage files, filter by coverage, normalize samples, and perform statistical comparisons. Use when analyzing single-base methylation patterns, comparing samples, or preparing data for DMR detection.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
144bio-microbiome-amplicon-processingOfficialS · 99Amplicon sequence variant (ASV) inference from 16S rRNA or ITS amplicon sequencing using DADA2. Covers quality filtering, error learning, denoising, and chimera removal. Use when processing demultiplexed amplicon FASTQ files to generate an ASV table for downstream analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
145bio-microbiome-differential-abundanceOfficialS · 99Differential abundance testing for microbiome data using compositionally-aware methods like ALDEx2, ANCOM-BC2, and MaAsLin2. Use when identifying taxa that differ between experimental groups while accounting for the compositional nature of microbiome data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
146bio-microbiome-diversity-analysisOfficialA · 79Alpha and beta diversity analysis for microbiome data. Calculate within-sample richness, evenness, and between-sample dissimilarity with phyloseq and vegan. Use when comparing community composition across samples or testing for group differences in microbiome structure.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
147bio-microbiome-functional-predictionOfficialS · 99Predict metagenome functional content from 16S rRNA marker gene data using PICRUSt2. Infer KEGG, MetaCyc, and EC abundances from ASV tables. Use when functional profiling is needed from 16S data without shotgun metagenomics sequencing.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
148bio-microbiome-qiime2-workflowOfficialS · 99QIIME2 command-line workflow for 16S/ITS amplicon analysis. Alternative to DADA2/phyloseq R workflow with built-in provenance tracking. Use when preferring CLI over R, needing reproducible provenance, or working within QIIME2 ecosystem.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
149bio-microbiome-taxonomy-assignmentOfficialA+ · 91Taxonomic classification of ASVs using reference databases like SILVA, GTDB, or UNITE. Covers naive Bayes classifiers (DADA2, IDTAXA) and exact matching approaches. Use when assigning taxonomy to ASVs after DADA2 amplicon processing.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
150bio-molecular-descriptorsOfficialS · 99Calculates molecular descriptors and fingerprints using RDKit. Computes Morgan fingerprints (ECFP), MACCS keys, Lipinski properties, QED drug-likeness, TPSA, and 3D conformer descriptors. Use when featurizing molecules for machine learning or filtering by drug-likeness criteria.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
151bio-molecular-ioOfficialS · 99Reads, writes, and converts molecular file formats (SMILES, SDF, MOL2, PDB) using RDKit and Open Babel. Handles structure parsing, canonicalization, and full standardization pipeline including sanitization, normalization, and tautomer canonicalization. Use when loading chemical libraries, converting formats, or preparing molecules for analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
152bio-multi-omics-data-harmonizationOfficialS · 99Preprocessing and harmonization of multi-omics data before integration. Covers normalization, batch correction, feature alignment, and missing value handling across data types. Use when preparing multi-omics datasets for integration analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
153bio-multi-omics-mixomics-analysisOfficialS · 99Supervised and unsupervised multi-omics integration with mixOmics. Includes sPLS for pairwise integration and DIABLO for multi-block discriminant analysis. Use when performing supervised multi-omics integration or identifying features that discriminate between groups.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
154bio-multi-omics-mofa-integrationOfficialS · 99Multi-Omics Factor Analysis (MOFA2) for unsupervised integration of multiple data modalities. Identifies shared and view-specific sources of variation. Use when integrating RNA-seq, proteomics, methylation, or other omics to discover latent factors driving biological variation across modalities.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
155bio-multi-omics-similarity-networkOfficialS · 99Similarity Network Fusion (SNF) for patient stratification using multi-omics data. Integrates multiple data types into a unified patient similarity network. Use when performing patient stratification or integrating multi-omics data into unified similarity networks.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
156bio-orchestratorOfficialB · 49Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
157bio-paired-end-fastqOfficialS · 99Handle paired-end FASTQ files (R1/R2) using Biopython. Use when working with Illumina paired reads, synchronizing pairs, interleaving/deinterleaving, or filtering paired data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
158bio-pathway-enrichment-visualizationOfficialS · 99Visualize enrichment results using enrichplot package functions. Use when creating publication-quality figures from clusterProfiler results. Covers dotplot, barplot, cnetplot, emapplot, gseaplot2, ridgeplot, and treeplot.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
159bio-pathway-go-enrichmentOfficialS · 99Gene Ontology over-representation analysis using clusterProfiler enrichGO. Use when identifying biological functions enriched in a gene list from differential expression or other analyses. Supports all three ontologies (BP, MF, CC), multiple ID types, and customizable statistical thresholds.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
160bio-pathway-gseaOfficialA+ · 95Gene Set Enrichment Analysis using clusterProfiler gseGO and gseKEGG. Use when analyzing ranked gene lists to find coordinated expression changes in gene sets without arbitrary significance cutoffs. Detects subtle but coordinated expression changes.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
161bio-pathway-kegg-pathwaysOfficialS · 99KEGG pathway and module enrichment analysis using clusterProfiler enrichKEGG and enrichMKEGG. Use when identifying metabolic and signaling pathways over-represented in a gene list. Supports 4000+ organisms via KEGG online database.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
162bio-pathway-reactomeOfficialS · 99Reactome pathway enrichment using ReactomePA package. Use when analyzing gene lists against Reactome's curated peer-reviewed pathway database. Performs over-representation analysis and GSEA with visualization and pathway hierarchy exploration.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
163bio-pathway-wikipathwaysOfficialS · 99WikiPathways enrichment using clusterProfiler and rWikiPathways. Use when analyzing gene lists against community-curated open-source pathways. Performs over-representation analysis and GSEA for 30+ species.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
164bio-pdb-geometric-analysisOfficialS · 99Perform geometric calculations on protein structures using Biopython Bio.PDB. Use when measuring distances, angles, and dihedrals, superimposing structures, calculating RMSD, or computing solvent accessible surface area (SASA).Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
165bio-pdb-structure-ioOfficialS · 99Parse and write protein structure files using Biopython Bio.PDB. Use when reading PDB, mmCIF, and MMTF files, downloading structures from RCSB PDB, or writing structures to various formats.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
166bio-pdb-structure-modificationOfficialA+ · 91Modify protein structures using Biopython Bio.PDB. Use when transforming coordinates, removing atoms or residues, adding new entities, modifying B-factors and occupancies, or building structures programmatically.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
167bio-pdb-structure-navigationOfficialS · 99Navigate protein structure hierarchy using Biopython Bio.PDB SMCRA model. Use when accessing models, chains, residues, and atoms, iterating over structure levels, or extracting sequences from PDB files.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
168bio-proteomics-data-importOfficialS · 99Load and parse mass spectrometry data formats including mzML, mzXML, and quantification tool outputs like MaxQuant proteinGroups.txt. Use when starting a proteomics analysis with raw or processed MS data. Handles contaminant filtering and missing value assessment.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
169bio-proteomics-dia-analysisOfficialS · 99Data-independent acquisition (DIA) proteomics analysis with DIA-NN and other tools. Use when analyzing DIA mass spectrometry data with library-free or library-based workflows for deep proteome profiling.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
170bio-proteomics-differential-abundanceOfficialS · 99Statistical testing for differentially abundant proteins between conditions. Covers limma and MSstats workflows with multiple testing correction. Use when identifying proteins with significant abundance changes between experimental groups.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
171bio-proteomics-peptide-identificationOfficialA- · 71Peptide-spectrum matching and protein identification from MS/MS data. Use when identifying peptides from tandem mass spectra. Covers database searching, spectral library matching, and FDR estimation using target-decoy approaches.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
172bio-proteomics-protein-inferenceOfficialS · 99Protein grouping and inference from peptide identifications. Use when resolving protein ambiguity from shared peptides. Handles protein groups and protein-level FDR control using parsimony and probabilistic approaches.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
173bio-proteomics-proteomics-qcOfficialS · 99Quality control and assessment for proteomics data. Use when evaluating proteomics data quality before downstream analysis. Covers sample metrics, missing value patterns, replicate correlation, batch effects, and intensity distributions.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
174bio-proteomics-ptm-analysisOfficialA · 79Post-translational modification analysis including phosphorylation, acetylation, and ubiquitination. Covers site localization, motif analysis, and quantitative PTM analysis. Use when analyzing phosphoproteomic data or other modification-enriched samples.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
175bio-proteomics-quantificationOfficialS · 99Protein quantification from mass spectrometry data including label-free (LFQ, intensity-based), isobaric labeling (TMT, iTRAQ), and metabolic labeling (SILAC) approaches. Use when extracting protein abundances from MS data for differential analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
176bio-proteomics-spectral-librariesOfficialA · 79Build, manage, and search spectral libraries for proteomics. Use when creating or working with spectral libraries for DIA analysis. Covers DDA-based library generation, predicted libraries (Prosit, DeepLC), and library formats.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
177bio-reaction-enumerationOfficialS · 99Enumerates chemical libraries through reaction SMARTS transformations using RDKit. Generates virtual compound libraries from building blocks using defined chemical reactions with product validation. Use when creating combinatorial libraries or enumerating products from synthetic routes.Other Tools and IntegrationsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
178bio-read-qc-adapter-trimmingOfficialS · 99Remove sequencing adapters from FASTQ files using Cutadapt and Trimmomatic. Supports single-end and paired-end reads, Illumina TruSeq, Nextera, and custom adapter sequences. Use when FastQC shows adapter contamination or before alignment of short reads.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
179bio-read-qc-contamination-screeningOfficialS · 99Detect sample contamination and cross-species reads using FastQ Screen. Screen reads against multiple reference genomes to identify bacterial, viral, adapter, or sample swap contamination. Use when suspecting cross-contamination or working with samples prone to microbial contamination.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
180bio-read-qc-fastp-workflowOfficialB · 49All-in-one read preprocessing with fastp including adapter trimming, quality filtering, deduplication, base correction, and HTML report generation. Use when preprocessing Illumina data and wanting a single fast tool instead of separate Cutadapt, Trimmomatic, and FastQC steps.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
181bio-read-qc-quality-filteringOfficialS · 99Filter reads by quality scores, length, and N content using Trimmomatic and fastp. Apply sliding window trimming, remove low-quality bases from read ends, and discard reads below thresholds. Use when reads have poor quality tails or require minimum quality for downstream analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
182bio-read-qc-quality-reportsOfficialS · 99Generate and interpret quality reports from FASTQ files using FastQC and MultiQC. Assess per-base quality, adapter content, GC bias, duplication levels, and overrepresented sequences. Use when performing initial QC on raw sequencing data or validating preprocessing results.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
183bio-read-qc-umi-processingOfficialS · 99Extract, process, and deduplicate reads using Unique Molecular Identifiers (UMIs) with umi_tools. Use when library prep includes UMIs and accurate molecule counting is needed, such as in single-cell RNA-seq, low-input RNA-seq, or targeted sequencing to distinguish PCR from biological duplicates.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
184bio-read-sequencesOfficialS · 99Read biological sequence files (FASTA, FASTQ, GenBank, EMBL, ABI, SFF) using Biopython Bio.SeqIO. Use when parsing sequence files, iterating multi-sequence files, random access to large files, or high-performance parsing.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
185bio-ribo-seq-orf-detectionOfficialA · 79Detect and quantify translated ORFs from Ribo-seq data including uORFs and novel ORFs using RiboCode and ORFquant. Use when identifying translated regions beyond annotated coding sequences or quantifying ORF-level translation.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
186bio-ribo-seq-riboseq-preprocessingOfficialS · 99Preprocess ribosome profiling data including adapter trimming, size selection, rRNA removal, and alignment. Use when preparing Ribo-seq reads for downstream analysis of translation.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
187bio-ribo-seq-ribosome-periodicityOfficialS · 99Validate Ribo-seq data quality by checking 3-nucleotide periodicity and calculating P-site offsets. Use when assessing library quality or determining read offsets for downstream analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
188bio-ribo-seq-ribosome-stallingOfficialS · 99Detect ribosome pausing and stalling sites from Ribo-seq data at codon resolution. Use when studying translational regulation, identifying pause sites, or analyzing codon-specific translation dynamics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
189bio-ribo-seq-translation-efficiencyOfficialA · 79Calculate translation efficiency (TE) as the ratio of ribosome occupancy to mRNA abundance. Use when comparing translational regulation between conditions or identifying genes with altered translation independent of transcription.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
190bio-rnaseq-qcOfficialS · 99RNA-seq specific quality control including rRNA contamination detection, strandedness verification, gene body coverage, and transcript integrity metrics. Use when validating RNA-seq libraries before differential expression analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
191bio-sashimi-plotsOfficialA · 79Creates sashimi plots showing RNA-seq read coverage and splice junction counts using ggsashimi or rmats2sashimiplot. Visualizes differential splicing events with grouped samples and junction read support. Use when visualizing specific splicing events or validating differential splicing results.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
192bio-sequence-statisticsOfficialS · 99Calculate sequence statistics (N50, length distribution, GC content, summary reports) using Biopython. Use when analyzing sequence datasets, generating QC reports, or comparing assemblies.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
193bio-similarity-searchingOfficialS · 99Performs molecular similarity searches using Tanimoto coefficient on fingerprints via RDKit. Finds structurally similar compounds using ECFP or MACCS keys and clusters molecules by structural similarity using Butina clustering. Use when finding analogs of a query compound or clustering chemical libraries.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
194bio-single-cell-batch-integrationOfficialS · 99Integrate multiple scRNA-seq samples/batches using Harmony, scVI, Seurat anchors, and fastMNN. Remove technical variation while preserving biological differences. Use when integrating multiple scRNA-seq batches or datasets.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
195bio-single-cell-cell-annotationOfficialS · 99Automated cell type annotation using reference-based methods including CellTypist, scPred, SingleR, and Azimuth for consistent, reproducible cell labeling. Use when automatically annotating cell types using reference datasets.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
196bio-single-cell-cell-communicationOfficialS · 99Infer cell-cell communication networks from scRNA-seq data using CellChat, NicheNet, and LIANA for ligand-receptor interaction analysis. Use when inferring ligand-receptor interactions between cell types.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
197bio-single-cell-clusteringOfficialS · 99Dimensionality reduction and clustering for single-cell RNA-seq using Seurat (R) and Scanpy (Python). Use for running PCA, computing neighbors, clustering with Leiden/Louvain algorithms, generating UMAP/tSNE embeddings, and visualizing clusters. Use when performing dimensionality reduction and clustering on single-cell data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
198bio-single-cell-data-ioOfficialS · 99Read, write, and create single-cell data objects using Seurat (R) and Scanpy (Python). Use for loading 10X Genomics data, importing/exporting h5ad and RDS files, creating Seurat objects and AnnData objects, and converting between formats. Use when loading, saving, or converting single-cell data formats.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
199bio-single-cell-doublet-detectionOfficialS · 99Detect and remove doublets (multiple cells captured in one droplet) from single-cell RNA-seq data. Uses Scrublet (Python), DoubletFinder (R), and scDblFinder (R). Essential QC step before clustering to avoid artificial cell populations. Use when identifying and removing doublets from scRNA-seq data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
200bio-single-cell-lineage-tracingOfficialS · 99Reconstruct cell lineage trees from CRISPR barcode tracing or mitochondrial mutations. Use when studying clonal dynamics, cell fate decisions, or developmental trajectories.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
201bio-single-cell-markers-annotationOfficialA- · 67Find marker genes and annotate cell types in single-cell RNA-seq using Seurat (R) and Scanpy (Python). Use for differential expression between clusters, identifying cluster-specific markers, scoring gene sets, and assigning cell type labels. Use when finding marker genes and annotating clusters.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
202bio-single-cell-metabolite-communicationOfficialS · 99Analyze metabolite-mediated cell-cell communication using MeboCost for metabolic signaling inference between cell types. Predict metabolite secretion and sensing patterns from scRNA-seq data. Use when studying metabolic crosstalk between cell populations or metabolite-receptor interactions.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
203bio-single-cell-multimodal-integrationOfficialA- · 71Analyze multi-modal single-cell data (CITE-seq, Multiome, spatial). Use when working with data that measures multiple modalities per cell like RNA + protein or RNA + ATAC. Use when analyzing CITE-seq, Multiome, or other multi-modal single-cell data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
204bio-single-cell-perturb-seqOfficialS · 99Analyze Perturb-seq and CROP-seq CRISPR screening data integrated with scRNA-seq. Use when identifying gene function through pooled genetic perturbations in single cells.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
205bio-single-cell-preprocessingOfficialS · 99Quality control, filtering, and normalization for single-cell RNA-seq using Seurat (R) and Scanpy (Python). Use for calculating QC metrics, filtering cells and genes, normalizing counts, identifying highly variable genes, and scaling data. Use when filtering, normalizing, and selecting features in single-cell data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
206bio-single-cell-scatac-analysisOfficialA · 79Single-cell ATAC-seq analysis with Signac (R/Seurat) and ArchR. Process 10X Genomics scATAC data, perform QC, dimensionality reduction, clustering, peak calling, and motif activity scoring with chromVAR. Use when analyzing single-cell ATAC-seq data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
207bio-single-cell-splicingOfficialA · 79Analyzes alternative splicing at single-cell resolution using BRIE2 for probabilistic PSI estimation or leafcutter2 for cluster-based analysis with NMD detection. Identifies cell-type-specific splicing patterns. Use when analyzing isoform usage in scRNA-seq or finding splicing differences between cell populations.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
208bio-single-cell-trajectory-inferenceOfficialS · 99Infer developmental trajectories and pseudotime from single-cell RNA-seq data using Monocle3, Slingshot, and scVelo for RNA velocity analysis. Use when inferring developmental trajectories or pseudotime.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
209bio-spatial-transcriptomics-image-analysisOfficialB · 49Process and analyze tissue images from spatial transcriptomics data using Squidpy. Extract image features, segment cells/nuclei, and compute morphological features from H&E or IF images. Use when processing tissue images for spatial transcriptomics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
210bio-spatial-transcriptomics-spatial-communicationOfficialS · 99Analyze cell-cell communication in spatial transcriptomics data using ligand-receptor analysis with Squidpy. Infer intercellular signaling, identify communication pathways, and visualize interaction networks. Use when analyzing cell-cell communication in spatial context.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
211bio-spatial-transcriptomics-spatial-data-ioOfficialS · 99Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. Read Space Ranger outputs, convert formats, and access spatial coordinates. Use when loading Visium, Xenium, MERFISH, or other spatial data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
212bio-spatial-transcriptomics-spatial-deconvolutionOfficialS · 99Estimate cell type composition in spatial transcriptomics spots using reference-based deconvolution. Use cell2location, RCTD, SPOTlight, or Tangram to infer cell type proportions from scRNA-seq references. Use when estimating cell type composition in spatial spots.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
213bio-spatial-transcriptomics-spatial-domainsOfficialA · 79Identify spatial domains and tissue regions in spatial transcriptomics data using Squidpy and Scanpy. Cluster spots considering both expression and spatial context to define anatomical regions. Use when identifying tissue domains or spatial regions.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
214bio-spatial-transcriptomics-spatial-multiomicsOfficialB- · 36Analyze high-resolution spatial platforms like Slide-seq, Stereo-seq, and Visium HD. Use when working with subcellular resolution or high-density spatial data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
215bio-spatial-transcriptomics-spatial-neighborsOfficialS · 99Build spatial neighbor graphs for spatial transcriptomics data using Squidpy. Compute k-nearest neighbors, Delaunay triangulation, and radius-based connectivity for downstream spatial analyses. Use when building spatial neighborhood graphs.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
216bio-spatial-transcriptomics-spatial-preprocessingOfficialS · 99Quality control, filtering, normalization, and feature selection for spatial transcriptomics data. Calculate QC metrics, filter spots/cells, normalize counts, and identify highly variable genes. Use when filtering and normalizing spatial transcriptomics data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
217bio-spatial-transcriptomics-spatial-proteomicsOfficialA · 79Analyzes spatial proteomics data from CODEX, IMC, and MIBI platforms including cell segmentation and protein colocalization. Use when working with multiplexed imaging data, analyzing protein spatial patterns, or integrating spatial proteomics with transcriptomics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
218bio-spatial-transcriptomics-spatial-statisticsOfficialS · 99Compute spatial statistics for spatial transcriptomics data using Squidpy. Calculate Moran's I, Geary's C, spatial autocorrelation, co-occurrence analysis, and neighborhood enrichment. Use when computing spatial autocorrelation or co-occurrence statistics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
219bio-spatial-transcriptomics-spatial-visualizationOfficialA · 79Visualize spatial transcriptomics data using Squidpy and Scanpy. Create tissue plots with gene expression, clusters, and annotations overlaid on histology images. Use when visualizing spatial expression patterns.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
220bio-splicing-qcOfficialA · 79Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. Use when evaluating data suitability for splicing analysis or troubleshooting low event detection.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
221bio-splicing-quantificationOfficialA · 79Quantifies alternative splicing events (PSI/percent spliced in) from RNA-seq using SUPPA2 from transcript TPM or rMATS-turbo from BAM files. Calculates inclusion levels for skipped exons, alternative splice sites, mutually exclusive exons, and retained introns. Use when measuring splice site usage or isoform ratios from RNA-seq data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
222bio-structural-biology-alphafold-predictionsOfficialB · 47Access and analyze AlphaFold protein structure predictions. Use when predicted structures are needed for proteins without experimental structures, or for confidence scores (pLDDT).Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
223bio-structural-biology-modern-structure-predictionOfficialB- · 25Predict protein structures using modern ML models including AlphaFold3, ESMFold, Chai-1, and Boltz-1. Use when predicting structures for novel proteins, protein complexes, or when comparing predictions across multiple methods.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
224bio-substructure-searchOfficialS · 99Searches molecular libraries for substructure matches using SMARTS patterns with RDKit. Filters compounds by pharmacophore features, functional groups, or scaffold matches with atom mapping. Use when finding compounds containing specific chemical moieties or filtering libraries by structural features.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
225bio-tcr-bcr-analysis-immcantation-analysisOfficialS · 99Analyze BCR repertoires for somatic hypermutation, clonal lineages, and B cell phylogenetics using the Immcantation framework. Use when studying B cell affinity maturation, germinal center dynamics, or antibody evolution.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
226bio-tcr-bcr-analysis-mixcr-analysisOfficialA- · 71Perform V(D)J alignment and clonotype assembly from TCR-seq or BCR-seq data using MiXCR. Use when processing raw immune repertoire sequencing data to identify clonotypes and their frequencies.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
227bio-tcr-bcr-analysis-repertoire-visualizationOfficialS · 99Create publication-quality visualizations of immune repertoire data including circos plots, clone tracking, diversity plots, and network graphs. Use when generating figures for repertoire comparisons, clonal dynamics, or V(D)J gene usage.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
228bio-tcr-bcr-analysis-scirpy-analysisOfficialS · 99Analyze single-cell TCR and BCR data integrated with gene expression using scirpy. Use when working with 10x Genomics VDJ data alongside scRNA-seq or when integrating immune receptor information with cell state analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
229bio-tcr-bcr-analysis-vdjtools-analysisOfficialS · 99Calculate immune repertoire diversity metrics, compare samples, and track clonal dynamics using VDJtools. Use when analyzing repertoire diversity, finding shared clonotypes, or comparing immune profiles between conditions.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
230bio-tumor-fraction-estimationOfficialB · 49Estimates circulating tumor DNA fraction from shallow whole-genome sequencing using ichorCNA. Detects copy number alterations via HMM segmentation and calculates ctDNA percentage. Requires 0.1-1x sWGS coverage. Use when quantifying tumor burden from liquid biopsy or monitoring treatment response.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
231bio-variant-annotationOfficialA- · 71Comprehensive variant annotation using bcftools annotate/csq, VEP, SnpEff, and ANNOVAR. Add database annotations, predict functional consequences, and assess clinical significance. Use when annotating variants with functional and clinical information.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
232bio-variant-callingOfficialS · 99Call SNPs and indels from aligned reads using bcftools mpileup and call. Use when detecting variants from BAM files or generating VCF from alignments.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
233bio-variant-calling-clinical-interpretationOfficialC+ · 24Clinical variant interpretation using ClinVar, ACMG guidelines, and pathogenicity predictors. Prioritize variants for diagnostic and research applications. Use when interpreting clinical significance of variants.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
234bio-variant-calling-deepvariantOfficialA · 79Deep learning-based variant calling with Google DeepVariant. Provides high accuracy for germline SNPs and indels from Illumina, PacBio, and ONT data. Use when calling variants with DeepVariant deep learning caller.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
235bio-variant-calling-filtering-best-practicesOfficialS · 99Comprehensive variant filtering including GATK VQSR, hard filters, bcftools expressions, and quality metric interpretation for SNPs and indels. Use when filtering variants using GATK best practices.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
236bio-variant-calling-joint-callingOfficialB · 49Joint genotype calling across multiple samples using GATK CombineGVCFs and GenotypeGVCFs. Essential for cohort studies, population genetics, and leveraging VQSR. Use when performing joint genotyping across multiple samples.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
237bio-variant-calling-structural-variant-callingOfficialA · 79Call structural variants (SVs) from short-read sequencing using Manta, Delly, and LUMPY. Detects deletions, insertions, inversions, duplications, and translocations that are too large for standard SNV callers. Use when detecting structural variants from short-read data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
238bio-variant-normalizationOfficialA+ · 91Normalize indel representation and split multiallelic variants using bcftools norm. Use when comparing variants from different callers or preparing VCF for downstream analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
239bio-vcf-basicsOfficialS · 99View, query, and understand VCF/BCF variant files using bcftools and cyvcf2. Use when inspecting variants, extracting specific fields, or understanding VCF format structure.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
240bio-vcf-manipulationOfficialS · 99Merge, concatenate, sort, intersect, and subset VCF files using bcftools. Use when combining variant files, comparing call sets, or restructuring VCF data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
241bio-vcf-statisticsOfficialS · 99Generate variant statistics, sample concordance, and quality metrics using bcftools stats and gtcheck. Use when evaluating variant quality, comparing samples, or summarizing VCF contents.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
242bio-virtual-screeningOfficialC · 0Performs structure-based virtual screening using AutoDock Vina 1.2 for molecular docking. Prepares receptor PDBQT files, generates ligand conformers, defines binding site boxes, and ranks compounds by predicted binding affinity. Use when screening chemical libraries against a protein structure to find potential binders.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
243bio-write-sequencesOfficialS · 99Write biological sequences to files (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. Use when saving sequences, creating new sequence files, or outputting modified records.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
244biologist-analystOfficialA+ · 98Analyzes living systems and biological phenomena through biological lens using evolution, molecular biology, ecology, and systems biology frameworks. Provides insights on mechanisms, adaptations, interactions, and life processes. Use when: Biological systems, health issues, evolutionary questions, ecological problems, biotechnology. Evaluates: Function, structure, heredity, evolution, interactions, molecular mechanisms.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
245biomedical-searchOfficialA · 79Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels. Powered by Valyu semantic search.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
246biomniOfficialC+ · 17Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS interpretation, rare disease diagnosis, or lab protocol optimization. Leverages LLM reasoning with code execution and integrated biomedical databases.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
247biopythonOfficialA+ · 90Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
248biorxiv-databaseOfficialA · 79Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
249bioservicesOfficialA+ · 92Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
250brainstormingOfficialA+ · 95You MUST use this before any creative work - creating features, building components, adding functionality, or modifying behavior. Explores user intent, requirements and design before implementation.Product ManagementFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
251brenda-databaseOfficialA- · 70Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
252cbioportal-databaseOfficialA · 79Query cBioPortal for cancer genomics data including somatic mutations, copy number alterations, gene expression, and survival data across hundreds of cancer studies. Essential for cancer target validation, oncogene/tumor suppressor analysis, and patient-level genomic profiling.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
253cell-free-expressionOfficialS · 100Guidance for cell-free protein synthesis (CFPS) optimization. Use when: (1) Planning CFPS experiments, (2) Troubleshooting low yield or aggregation, (3) Optimizing DNA template design for CFPS, (4) Expressing difficult proteins (disulfide-rich, toxic, membrane).Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
254cellxgene-censusOfficialA- · 74Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
255chembl-databaseOfficialS · 99Query ChEMBL's bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
256chembl-searchOfficialB- · 34Search ChEMBL bioactive molecules database with natural language queries. Find compounds and assay data with Valyu semantic search.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
257chemist-analystOfficialA · 78Analyzes events through chemistry lens using molecular structure, reaction mechanisms, thermodynamics, kinetics, and analytical techniques (spectroscopy, chromatography, mass spectrometry). Provides insights on chemical processes, material properties, reaction pathways, synthesis, and analytical methods. Use when: Chemical reactions, material analysis, synthesis planning, process optimization, environmental chemistry. Evaluates: Molecular structure, reaction mechanisms, yield, selectivity, safety, environmental impact.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
258citation-managementOfficialC · 0Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
259claw-ancestry-pcaOfficialA · 79Ancestry decomposition PCA against the Simons Genome Diversity ProjectBiology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
260claw-metagenomicsOfficialA · 79Shotgun metagenomics profiling — taxonomy, resistome, and functional pathwaysBiology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
261claw-semantic-simOfficialA · 79Semantic Similarity Index for disease research literature using PubMedBERT embeddingsBiology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
262clinical-decision-supportOfficialA+ · 91Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
263clinical-diagnostic-reasoningOfficialS · 99Identify and counteract cognitive biases in medical decision-making through systematic error analysis and contextual algorithm application. For diagnostic reasoning, treatment decisions, and clinical judgment improvement. NOT for basic medical knowledge, technical procedures, or non-clinical healthcare domains.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
264clinical-reportsOfficialB+ · 56Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
265clinical-trial-protocol-skillOfficialA+ · 90Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical study", "Research similar trials for [intervention]", or when developing FDA submission documentation for investigational products.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
266clinical-trials-searchOfficialA · 79Search ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu semantic search.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
267clinicaltrials-databaseOfficialB- · 34Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
268clinpgxOfficialA · 79Query the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labelsBiology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
269clinpgx-databaseOfficialA- · 70Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
270clinvar-databaseOfficialB · 49Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
271cobrapyOfficialS · 99Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
272convergence-studyOfficialS · 99Spatial and temporal convergence analysis with Richardson extrapolation and Grid Convergence Index (GCI) for solution verificationData Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
273cosmic-databaseOfficialB · 48Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
274crisis-detection-intervention-aiOfficialB- · 31Detect crisis signals in user content using NLP, mental health sentiment analysis, and safe intervention protocols. Implements suicide ideation detection, automated escalation, and crisis resource integration. Use for mental health apps, recovery platforms, support communities. Activate on "crisis detection", "suicide prevention", "mental health NLP", "intervention protocol". NOT for general sentiment analysis, medical diagnosis, or replacing professional help.Support & Service ManagementFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
275crisis-response-protocolOfficialS · 99Handle mental health crisis situations in AI coaching safely. Use when implementing crisis detection, safety protocols, emergency escalation, or suicide prevention features. Activates for crisis keywords, safety planning, hotline integration, and risk assessment.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
276daskOfficialA+ · 96Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For out-of-core analytics on single machine use vaex; for in-memory speed use polars.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
277data-stats-analysisOfficialS · 99Perform statistical tests, hypothesis testing, correlation analysis, and multiple testing corrections using scipy and statsmodels. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
278data-transformOfficialS · 99Transform, clean, reshape, and preprocess data using pandas and numpy. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
279data-viz-plotsOfficialA+ · 95Create publication-quality plots and visualizations using matplotlib and seaborn. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).Data VisualizationFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
280datacommons-clientOfficialA · 79Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health statistics, environmental data, or any public datasets available through Data Commons. Applicable for querying population statistics, GDP figures, unemployment rates, disease prevalence, geographic entity resolution, and exploring relationships between statistical entities.Data PlatformsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
281datamolOfficialS · 99Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery: SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
282deep-researchOfficialS · 99Execute autonomous multi-step deep research on any topic. Use when the user asks for comprehensive research, literature reviews, competitive analysis, topic deep-dives, or wants to understand a complex subject from multiple angles. Triggers on "deep research", "research on", "investigate", "literature review", "comprehensive analysis", "what do we know about", "summarize research on".ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
283deepchemOfficialA+ · 95Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks, pretrained models, featurization, for drug discovery ML.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
284deeptoolsOfficialB · 49NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
285depmapOfficialS · 100Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use for identifying cancer-specific vulnerabilities, synthetic lethal interactions, and validating oncology drug targets.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
286diffdockOfficialA · 79Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
287differentiation-schemesOfficialS · 99Select and apply numerical differentiation schemes for PDE/ODE discretization. Use when choosing finite difference/volume/spectral schemes, building stencils, handling boundaries, estimating truncation error, or analyzing dispersion and dissipation.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
288dispatching-parallel-agentsOfficialA+ · 95Use when facing 2+ independent tasks that can be worked on without shared state or sequential dependenciesCoding AgentsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
289dnanexus-integrationOfficialA+ · 98DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
290doc-coauthoringOfficialA+ · 95Guide users through a structured workflow for co-authoring documentation. Use when user wants to write documentation, proposals, technical specs, decision docs, or similar structured content. This workflow helps users efficiently transfer context, refine content through iteration, and verify the doc works for readers. Trigger when user mentions writing docs, creating proposals, drafting specs, or similar documentation tasks.Workplace & ProductivityFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
291docxOfficialB · 49Comprehensive document creation, editing, and analysis with support for tracked changes, comments, formatting preservation, and text extraction. When Claude needs to work with professional documents (.docx files) for: (1) Creating new documents, (2) Modifying or editing content, (3) Working with tracked changes, (4) Adding comments, or any other document tasksWorkplace & ProductivityFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
292docxOfficialB- · 27Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when extracting or reorganizing content from .docx files, inserting or replacing images in documents, performing find-and-replace in Word files, working with tracked changes or comments, or converting content into a polished Word document. If the user asks for a 'report', 'memo', 'letter', 'template', or similar deliverable as a Word or .docx file, use this skill. Do NOT use for PDFs, spreadsheets, Google Docs, or general coding tasks unrelated to document generation.Workplace & ProductivityFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
293drug-discovery-searchOfficialB · 38End-to-end drug discovery platform combining ChEMBL compounds, DrugBank, targets, and FDA labels. Natural language powered by Valyu.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
294drug-labels-searchOfficialA · 79Search FDA drug labels with natural language queries. Official drug information, indications, and safety data via Valyu.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
295drug-photoOfficialB · 49Medication photo to personalised PGx dosage card via Claude vision — snap a pill, get genotype-informed guidanceBiology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
296drugbank-databaseOfficialA+ · 95Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, targets, pathways, chemical structures, and pharmacology data. This skill should be used when working with pharmaceutical data, drug discovery research, pharmacology studies, drug-drug interaction analysis, target identification, chemical similarity searches, ADMET predictions, or any task requiring detailed drug and drug target information from DrugBank.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
297drugbank-searchOfficialA · 79Search DrugBank comprehensive drug database with natural language queries. Drug mechanisms, interactions, and safety data powered by Valyu.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
298emergency-cardOfficialB · 49生成紧急情况下快速访问的医疗信息摘要卡片。当用户需要旅行、就诊准备、紧急情况或询问"紧急信息"、"医疗卡片"、"急救信息"时使用此技能。提取关键信息(过敏、用药、急症、植入物),支持多格式输出(JSON、文本、二维码),用于急救或快速就医。Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
299ena-databaseOfficialS · 99Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and bioinformatics pipelines. Supports multiple formats.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
300ensembl-databaseOfficialB+ · 54Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
301epidemiologist-analystOfficialB · 49Analyzes disease patterns and health events through epidemiological lens using surveillance systems, outbreak investigation methods, and disease modeling frameworks. Provides insights on disease spread, risk factors, prevention strategies, and public health interventions. Use when: Disease outbreaks, health policy evaluation, risk assessment, intervention planning. Evaluates: Transmission dynamics, risk factors, causality, population health impact, intervention effectiveness.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
302equity-scorerOfficialA+ · 98Compute HEIM diversity and equity metrics from VCF or ancestry data. Generates heterozygosity, FST, PCA plots, and a composite HEIM Equity Score with markdown reports.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
303esmOfficialB- · 36Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
304etetoolkitOfficialA+ · 92Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
305executing-plansOfficialS · 99Use when you have a written implementation plan to execute in a separate session with review checkpointsProduct ManagementFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
306exploratory-data-analysisOfficialA+ · 88Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
307family-health-analyzerOfficialS · 99分析家族病史、评估遗传风险、识别家庭健康模式、提供个性化预防建议Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
308fastq-analysis-pipelineOfficialA · 79Guide through omicverse's alignment module for SRA downloading, FASTQ quality control, STAR alignment, gene quantification, and single-cell kallisto/bustools pipelines covering both bulk and single-cell RNA-seq workflows.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
309fda-databaseOfficialC · 0Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identification (UNII), for FDA regulatory data analysis and safety research.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
310find-skillsOfficialA · 79Helps users discover and install agent skills when they ask questions like "how do I do X", "find a skill for X", "is there a skill that can...", or express interest in extending capabilities. This skill should be used when the user is looking for functionality that might exist as an installable skill.Other Tools and IntegrationsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
311fitness-analyzerOfficialA · 79分析运动数据、识别运动模式、评估健身进展,并提供个性化训练建议。支持与慢性病数据的关联分析。SportsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
312flowioOfficialA · 79Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
313foldseekOfficialA · 76Structure similarity search with Foldseek. Use this skill when: (1) Finding similar structures in PDB/AFDB databases, (2) Structural homology search, (3) Database queries by 3D structure, (4) Finding remote homologs not detected by sequence, (5) Clustering structures by similarity. For sequence similarity, use uniprot BLAST. For structure prediction, use chai or boltz.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
314galaxy-bridgeOfficialC · 0Galaxy tool discovery, intelligent recommendation, and execution — 8,000+ bioinformatics tools from usegalaxy.org with multi-signal scoring and workflow suggestionsBiology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
315gene-databaseOfficialB · 44Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
316genimlOfficialA · 79This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
317genome-compareOfficialB- · 31Compare your genome to George Church (PGP-1) and estimate ancestry composition via IBS and EM admixtureBiology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
318geo-databaseOfficialA · 79Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
319geopandasOfficialA · 79Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operations, choropleth mapping, or any task involving reading/writing/analyzing vector geographic data. Supports PostGIS databases, interactive maps, and integration with matplotlib/folium/cartopy. Use for tasks like buffer analysis, spatial joins between datasets, dissolving boundaries, clipping data, calculating areas/distances, reprojecting coordinate systems, creating maps, or converting between spatial file formats.Location ServicesFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
320ggetOfficialB · 49CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
321ginkgo-cloud-labOfficialS · 99Submit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on Reconfigurable Automation Carts (RACs). Use when the user wants to run cell-free protein expression (validation or optimization), generate fluorescent pixel art, or interact with Ginkgo Cloud Lab services. Covers protocol selection, input preparation, pricing, and ordering workflows.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
322glycoengineeringOfficialA · 79Analyze and engineer protein glycosylation. Scan sequences for N-glycosylation sequons (N-X-S/T), predict O-glycosylation hotspots, and access curated glycoengineering tools (NetOGlyc, GlycoShield, GlycoWorkbench). For glycoprotein engineering, therapeutic antibody optimization, and vaccine design.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
323gnomad-databaseOfficialB+ · 57Query gnomAD (Genome Aggregation Database) for population allele frequencies, variant constraint scores (pLI, LOEUF), and loss-of-function intolerance. Essential for variant pathogenicity interpretation, rare disease genetics, and identifying loss-of-function intolerant genes.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
324goal-analyzerOfficialS · 99分析健康目标数据、识别目标模式、评估目标进度,并提供个性化目标管理建议。支持与营养、运动、睡眠等健康数据的关联分析。Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
325grief-companionOfficialS · 99Compassionate bereavement support, memorial creation, grief education, and healing journey guidance. Specializes in understanding grief stages, creating meaningful tributes, and supporting the non-linear path of loss.FreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
326gtarsOfficialA+ · 95High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
327gtex-databaseOfficialS · 100Query GTEx (Genotype-Tissue Expression) portal for tissue-specific gene expression, eQTLs (expression quantitative trait loci), and sQTLs. Essential for linking GWAS variants to gene regulation, understanding tissue-specific expression, and interpreting non-coding variant effects.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
328gwas-databaseOfficialA+ · 98Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epidemiology and polygenic risk scores.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
329gwas-lookupOfficialC+ · 16Federated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ), GTEx, eQTL Catalogue, and more.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
330gwas-prsOfficialB · 43Calculate polygenic risk scores from DTC genetic data using the PGS CatalogBiology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
331health-trend-analyzerOfficialA+ · 96分析一段时间内健康数据的趋势和模式。关联药物、症状、生命体征、化验结果和其他健康指标的变化。识别令人担忧的趋势、改善情况,并提供数据驱动的洞察。当用户询问健康趋势、模式、随时间的变化或"我的健康状况有什么变化?"时使用。支持多维度分析(体重/BMI、症状、药物依从性、化验结果、情绪睡眠),相关性分析,变化检测,以及交互式HTML可视化报告(ECharts图表)。Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
332histolabOfficialA · 79Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathology slides, processing H&E or IHC stained tissue images, extracting tiles from gigapixel pathology images, detecting tissue regions, segmenting tissue masks, or preparing datasets for computational pathology deep learning pipelines. Applies to WSI formats (SVS, TIFF, NDPI), tile-based analysis, and histological image preprocessing workflows.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
333hmdb-databaseOfficialS · 99Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
334hrv-alexithymia-expertOfficialA · 75Heart rate variability biometrics and emotional awareness training. Expert in HRV analysis, interoception training, biofeedback, and emotional intelligence. Activate on 'HRV', 'heart rate variability', 'alexithymia', 'biofeedback', 'vagal tone', 'interoception', 'RMSSD', 'autonomic nervous system'. NOT for general fitness tracking without HRV focus, simple heart rate monitoring, or diagnosing medical conditions (only licensed professionals diagnose).Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
335hypogenicOfficialA+ · 98Automated hypothesis generation and testing using large language models. Use this skill when generating scientific hypotheses from datasets, combining literature insights with empirical data, testing hypotheses against observational data, or conducting systematic hypothesis exploration for research discovery in domains like deception detection, AI content detection, mental health analysis, or other empirical research tasks.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
336hypothesis-generationOfficialC+ · 23Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
337infographicsOfficialC · 0Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review. Integrates research-lookup and web search for accurate data. Supports 10 infographic types, 8 industry styles, and colorblind-safe palettes.Data VisualizationFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
338interpro-databaseOfficialA · 79Query InterPro for protein family, domain, and functional site annotations. Integrates Pfam, PANTHER, PRINTS, SMART, SUPERFAMILY, and 11 other member databases. Use for protein function prediction, domain architecture analysis, evolutionary classification, and GO term mapping.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
339ipsaeOfficialB+ · 60Binder design ranking using ipSAE (interprotein Score from Aligned Errors). Use this skill when: (1) Ranking binder designs for experimental testing, (2) Filtering BindCraft or RFdiffusion outputs, (3) Comparing AF2/AF3/Boltz predictions, (4) Predicting binding success rates, (5) Need better ranking than ipTM or iPAE. For structure prediction, use chai or alphafold. For QC thresholds, use protein-qc.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
340iso-13485-certificationOfficialA+ · 96Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing documentation, (2) creating Quality Manuals, (3) developing required procedures and work instructions, (4) preparing Medical Device Files, (5) understanding ISO 13485 requirements, or (6) identifying missing documentation for medical device certification. Also use when users mention medical device regulations, QMS certification, FDA QMSR, EU MDR, or need help with quality system documentation.LegalFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
341jaspar-databaseOfficialA- · 72Query JASPAR for transcription factor binding site (TFBS) profiles (PWMs/PFMs). Search by TF name, species, or class; scan DNA sequences for TF binding sites; compare matrices; essential for regulatory genomics, motif analysis, and GWAS regulatory variant interpretation.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
342jungian-psychologistOfficialA+ · 93Expert in Jungian analytical psychology, depth psychology, shadow work, archetypal analysis, dream interpretation, active imagination, addiction/recovery through Jungian lens, and the individuation process - grounded in primary sources and clinical frameworks. Activate on 'Jung', 'Jungian', 'shadow work', 'archetypes', 'dream interpretation', 'active imagination', 'individuation', 'anima', 'animus', 'collective unconscious', 'addiction', 'recovery', 'spiritus contra spiritum'. NOT for therapy or diagnosis (only licensed analysts diagnose), active psychosis, severe dissociation, or replacing the relational container of actual Jungian analysis.Spirituality & EsotericaFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
343kegg-databaseOfficialB+ · 56Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
344labarchive-integrationOfficialC · 0Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
345labstepOfficialS · 99Interact with the Labstep electronic lab notebook API using labstepPy. Query experiments, protocols, resources, inventory, and other lab entities.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
346lamindbOfficialA+ · 90This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
347latchbio-integrationOfficialA+ · 98Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
348latex-postersOfficialA+ · 94Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
349linear-solversOfficialS · 99Select and configure linear solvers for systems Ax=b in dense and sparse problems. Use when choosing direct vs iterative methods, diagnosing convergence issues, estimating conditioning, selecting preconditioners, or debugging stagnation in GMRES/CG/BiCGSTAB.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
350lit-synthesizerOfficialA+ · 95Search PubMed and bioRxiv, summarise papers with LLM, build citation graphs, and generate literature review sections.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
351literature-reviewOfficialA- · 71Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
352literature-searchOfficialA · 79Comprehensive scientific literature search across PubMed, arXiv, bioRxiv, medRxiv. Natural language queries powered by Valyu semantic search.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
353lobster-bioinformaticsOfficialA+ · 95Run bioinformatics analyses using Lobster AI - single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization. Use when analyzing genomics data, searching for papers/datasets, or working with H5AD, CSV, GEO/SRA accessions, or biological data. Requires lobster-ai package installed.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
354markitdownOfficialB · 41Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.Workplace & ProductivityFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
355matchmsOfficialA+ · 91Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
356matplotlibOfficialB · 49Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots use seaborn; for interactive plots use plotly; for publication-ready multi-panel figures with journal styling, use scientific-visualization.Data VisualizationFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
357mcpmed-bioinformatics-serverOfficialS · 100Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
358medchemOfficialA · 79Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
359medea-therapeutic-discoveryOfficialS · 100An AI agent for therapeutic discovery that executes transparent, multi-step omics analyses including research planning, code execution, and literature reasoning.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
360medical-entity-extractorOfficialS · 100Extract medical entities (symptoms, medications, lab values, diagnoses) from patient messages.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
361medical-imaging-reviewOfficialS · 99Write comprehensive literature reviews for medical imaging AI research. Use when writing survey papers, systematic reviews, or literature analyses on topics like segmentation, detection, classification in CT, MRI, X-ray, ultrasound, or pathology imaging. Triggers on requests for "review paper", "survey", "literature review", "综述", "systematic review", or mentions of writing academic reviews on deep learning for medical imaging.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
362medical-research-toolkitOfficialB+ · 57Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research. Access ChEMBL, PubMed, ClinicalTrials.gov, OpenTargets, OpenFDA, OMIM, Reactome, KEGG, UniProt, and more through a unified MCP endpoint. Use when researching disease targets, finding approved/investigational drugs, searching clinical evidence, discovering genetic associations, or analyzing compound bioactivity data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
363medrxiv-searchOfficialB- · 33Search medRxiv medical preprints with natural language queries. Powered by Valyu semantic search.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
364mental-health-analyzerOfficialA · 79分析心理健康数据、识别心理模式、评估心理健康状况、提供个性化心理健康建议。支持与睡眠、运动、营养等其他健康数据的关联分析。Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
365mesh-generationOfficialS · 99Plan and evaluate mesh generation for numerical simulations. Use when choosing grid resolution, checking aspect ratios/skewness, estimating mesh quality constraints, or planning adaptive mesh refinement for PDE discretization.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
366metabolomics-workbench-databaseOfficialA+ · 98Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
367modern-drug-rehab-computerOfficialS · 99Comprehensive knowledge system for addiction recovery environments, supporting both residential and outpatient (IOP/PHP) patients. Expert in evidence-based treatment modalities (CBT, DBT, MI, EMDR, MAT), recovery resources, coping strategies, crisis intervention, family systems, and holistic wellness. Activate on "rehab", "addiction recovery", "substance abuse", "treatment center", "IOP", "PHP", "detox", "sobriety support", "MAT", "Suboxone", "methadone", "12 step", "SMART Recovery". NOT for prescribing medications (consult medical professionals), emergency overdose situations (call 911), or replacing licensed counselors/therapists.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
368molecular-dynamicsOfficialS · 100Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein/small molecule systems, define force fields, run energy minimization and production MD, analyze trajectories (RMSD, RMSF, contact maps, free energy surfaces). For structural biology, drug binding, and biophysics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
369molfeatOfficialA+ · 96Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
370monarch-databaseOfficialS · 100Query the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species. Integrates OMIM, ORPHANET, HPO, ClinVar, and model organism databases. Use for rare disease gene discovery, phenotype-to-gene mapping, cross-species disease modeling, and HPO term lookup.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
371multi-search-engineOfficialA+ · 98Multi search engine integration with 17 engines (8 CN + 9 Global). Supports advanced search operators, time filters, site search, privacy engines, and WolframAlpha knowledge queries. No API keys required.Search & Data ExtractionFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
372networkxOfficialB · 49Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
373neurokit2OfficialA · 79Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements. Applicable for heart rate variability analysis, event-related potentials, complexity measures, autonomic nervous system assessment, psychophysiology research, and multi-modal physiological signal integration.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
374nonlinear-solversOfficialS · 99Select and configure nonlinear solvers for f(x)=0 or min F(x). Use for Newton methods, quasi-Newton (BFGS, L-BFGS), Broyden, Anderson acceleration, diagnosing convergence issues, choosing line search vs trust region, and analyzing Jacobian quality.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
375numerical-integrationOfficialA · 79Select and configure time integration methods for ODE/PDE simulations. Use when choosing explicit/implicit schemes, setting error tolerances, adapting time steps, diagnosing integration accuracy, planning IMEX splitting, or handling stiff/non-stiff coupled systems.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
376numerical-stabilityOfficialA · 79Analyze and enforce numerical stability for time-dependent PDE simulations. Use when selecting time steps, choosing explicit/implicit schemes, diagnosing numerical blow-up, checking CFL/Fourier criteria, von Neumann analysis, matrix conditioning, or detecting stiffness in advection/diffusion/reaction problems.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
377nutrition-analyzerOfficialS · 99分析营养数据、识别营养模式、评估营养状况,并提供个性化营养建议。支持与运动、睡眠、慢性病数据的关联分析。Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
378occupational-health-analyzerOfficialA · 79分析职业健康数据、识别工作相关健康风险、评估职业健康状况、提供个性化职业健康建议。支持与睡眠、运动、心理健康等其他健康数据的关联分析。Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
379omero-integrationOfficialA · 79Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
380ontology-explorerOfficialC · 12Parse, navigate, and query materials science ontology structure (classes, properties, hierarchy). Use when exploring an ontology like CMSO, understanding class relationships, finding properties for a given class, or searching for ontology terms related to a materials science concept. Supports OWL/XML format from the OCDO ecosystem (CMSO, ASMO, CDCO, PODO, PLDO, LDO).ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
381open-notebookOfficialC · 0Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when organizing research materials into notebooks, ingesting diverse content sources (PDFs, videos, audio, web pages, Office documents), generating AI-powered notes and summaries, creating multi-speaker podcasts from research, chatting with documents using context-aware AI, searching across materials with full-text and vector search, or running custom content transformations. Supports 16+ AI providers including OpenAI, Anthropic, Google, Ollama, Groq, and Mistral with complete data privacy through self-hosting.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
382open-targets-searchOfficialB · 49Search Open Targets drug-disease associations with natural language queries. Target validation powered by Valyu semantic search.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
383openalex-databaseOfficialB+ · 62Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open access publications, or conducting bibliometric analysis across 240M+ scholarly works. Use for literature searches, research output analysis, citation analysis, and academic database queries.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
384opentargets-databaseOfficialA- · 71Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
385opentrons-integrationOfficialA+ · 98Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (heater-shaker, thermocycler), labware management, for automated pipetting workflows.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
386paper-2-webOfficialA · 79This skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing print-ready posters from LaTeX or PDF sources.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
387parameter-optimizationOfficialA · 79Explore and optimize simulation parameters via design of experiments (DOE), sensitivity analysis, and optimizer selection. Use for calibration, uncertainty studies, parameter sweeps, LHS sampling, Sobol analysis, surrogate modeling, or Bayesian optimization setup.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
388patents-searchOfficialA · 79Search global patents with natural language queries. Prior art, patent landscapes, and innovation tracking via Valyu.LegalFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
389pathmlOfficialC+ · 14Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. Use this skill when working with histopathology slides, H&E stained images, multiplex immunofluorescence (CODEX, Vectra), spatial proteomics, nucleus detection/segmentation, tissue graph construction, or training ML models on pathology data. Supports 160+ slide formats including Aperio SVS, NDPI, DICOM, OME-TIFF for digital pathology workflows.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
390patiently-aiOfficialS · 99Patiently AI simplifies medical documents for patients. Takes doctor's letters, test results, prescriptions, discharge summaries, and clinical notes and explains them in clear, personalised language. Built by PharmaTools.AI.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
391pdbOfficialA · 79Fetch and analyze protein structures from RCSB PDB. Use this skill when: (1) Need to download a structure by PDB ID, (2) Search for similar structures, (3) Prepare target for binder design, (4) Extract specific chains or domains, (5) Get structure metadata. For sequence lookup, use uniprot. For binder design workflow, use binder-design.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
392pdb-databaseOfficialB+ · 62Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
393pdfOfficialA · 79Comprehensive PDF manipulation toolkit for extracting text and tables, creating new PDFs, merging/splitting documents, and handling forms. When Claude needs to fill in a PDF form or programmatically process, generate, or analyze PDF documents at scale.Workplace & ProductivityFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
394pdfOfficialA · 79Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and OCR on scanned PDFs to make them searchable. If the user mentions a .pdf file or asks to produce one, use this skill.Workplace & ProductivityFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
395pdf-processingOfficialA · 79Extract text and tables from PDF files, fill forms, merge documents. Use when working with PDF files or when the user mentions PDFs, forms, or document extraction.Workplace & ProductivityFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
396pdf-processing-proOfficialA · 78Production-ready PDF processing with forms, tables, OCR, validation, and batch operations. Use when working with complex PDF workflows in production environments, processing large volumes of PDFs, or requiring robust error handling and validation.Workplace & ProductivityFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
397peer-reviewOfficialA · 79Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
398performance-profilingOfficialA · 79Identify computational bottlenecks, analyze scaling behavior, estimate memory requirements, and receive optimization recommendations for any computational simulation. Use when simulations are slow, investigating parallel efficiency, planning resource allocation, or seeking performance improvements through timing analysis, scaling studies, memory profiling, or bottleneck detection.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
399perplexity-searchOfficialA- · 72Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting grounded answers with source citations, or accessing information beyond the model's knowledge cutoff. Provides access to multiple Perplexity models including Sonar Pro, Sonar Pro Search (advanced agentic search), and Sonar Reasoning Pro through a single OpenRouter API key.Search & Data ExtractionFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
400pharmgx-reporterOfficialA · 79Pharmacogenomic report from DTC genetic data (23andMe/AncestryDNA) — 12 genes, 31 SNPs, 51 drugsBiology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
401phylogeneticsOfficialA · 79Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
402polarsOfficialB · 49Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory. Lazy evaluation, parallel execution, Apache Arrow backend. Best for 1-100GB datasets, ETL pipelines, faster pandas replacement. For larger-than-RAM data use dask or vaex.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
403post-processingOfficialA+ · 96Extract, analyze, and visualize simulation output data. Use for field extraction, time series analysis, line profiles, statistical summaries, derived quantity computation, result comparison to references, and automated report generation from simulation results.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
404pptxOfficialB · 42Use this skill any time a .pptx file is involved in any way — as input, output, or both. This includes: creating slide decks, pitch decks, or presentations; reading, parsing, or extracting text from any .pptx file (even if the extracted content will be used elsewhere, like in an email or summary); editing, modifying, or updating existing presentations; combining or splitting slide files; working with templates, layouts, speaker notes, or comments. Trigger whenever the user mentions "deck," "slides," "presentation," or references a .pptx filename, regardless of what they plan to do with the content afterward. If a .pptx file needs to be opened, created, or touched, use this skill.Workplace & ProductivityFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
405pptx-postersOfficialA · 79Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern web-based poster design with responsive layouts and easy visual integration.Architecture & DesignFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
406profile-reportOfficialS · 99Unified personal genomic profile report — reads a PatientProfile JSON and synthesizes all skill results into a single "Your Genomic Profile" document.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
407protein-design-workflowOfficialS · 100End-to-end guidance for protein design pipelines. Use this skill when: (1) Starting a new protein design project, (2) Need step-by-step workflow guidance, (3) Understanding the full design pipeline, (4) Planning compute resources and timelines, (5) Integrating multiple design tools. For tool selection, use binder-design. For QC thresholds, use protein-qc.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
408protein-interaction-network-analysisOfficialA- · 69Analyze protein-protein interaction networks using STRING, BioGRID, and SASBDB databases. Maps protein identifiers, retrieves interaction networks with confidence scores, performs functional enrichment analysis (GO/KEGG/Reactome), and optionally includes structural data. No API key required for core functionality (STRING). Use when analyzing protein networks, discovering interaction partners, identifying functional modules, or studying protein complexes.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
409protein-qcOfficialA · 79Quality control metrics and filtering thresholds for protein design. Use this skill when: (1) Evaluating design quality for binding, expression, or structure, (2) Setting filtering thresholds for pLDDT, ipTM, PAE, (3) Checking sequence liabilities (cysteines, deamidation, polybasic clusters), (4) Creating multi-stage filtering pipelines, (5) Computing PyRosetta interface metrics (dG, SC, dSASA), (6) Checking biophysical properties (instability, GRAVY, pI), (7) Ranking designs with composite scoring. This skill provides research-backed thresholds from binder design competitions and published benchmarks.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
410protocolsio-integrationOfficialA · 79Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
411psychologist-analystOfficialA+ · 98Analyzes events through psychological lens using cognitive psychology, social psychology, developmental psychology, clinical psychology, and neuroscience. Provides insights on behavior, cognition, emotion, motivation, group dynamics, decision-making biases, mental health, and individual differences. Use when: Behavioral patterns, decision-making, group behavior, mental health, leadership, persuasion, trauma, development. Evaluates: Cognitive processes, emotional responses, motivations, biases, group dynamics, personality, mental states.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
412pubchem-databaseOfficialB+ · 52Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
413pubmed-databaseOfficialA+ · 97Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
414pubmed-searchOfficialS · 99Search PubMed for scientific literature. Use when the user asks to find papers, search literature, look up research, find publications, or asks about recent studies. Triggers on "pubmed", "papers", "literature", "publications", "research on", "studies about".ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
415pydeseq2OfficialA+ · 95Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
416pydicomOfficialA- · 71Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing, or modifying medical imaging data in DICOM format, extracting pixel data from medical images (CT, MRI, X-ray, ultrasound), anonymizing DICOM files, working with DICOM metadata and tags, converting DICOM images to other formats, handling compressed DICOM data, or processing medical imaging datasets. Applies to tasks involving medical image analysis, PACS systems, radiology workflows, and healthcare imaging applications.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
417pyhealthOfficialA · 79Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug recommendation), medical coding systems (ICD, NDC, ATC), physiological signals (EEG, ECG), healthcare datasets (MIMIC-III/IV, eICU, OMOP), or implementing deep learning models for healthcare applications (RETAIN, SafeDrug, Transformer, GNN).Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
418pylabrobotOfficialS · 99Laboratory automation toolkit for controlling liquid handlers, plate readers, pumps, heater shakers, incubators, centrifuges, and analytical equipment. Use this skill when automating laboratory workflows, programming liquid handling robots (Hamilton STAR, Opentrons OT-2, Tecan EVO), integrating lab equipment, managing deck layouts and resources (plates, tips, containers), reading plates, or creating reproducible laboratory protocols. Applicable for both simulated protocols and physical hardware control.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
419pymc-bayesian-modelingOfficialA+ · 96Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posterior checks, for probabilistic programming and inference.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
420pymooOfficialA+ · 94Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
421pyopenmsOfficialS · 99Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal processing, feature detection, peptide identification, and quantitative analysis. Apply when working with mass spectrometry data, analyzing proteomics experiments, or processing metabolomics datasets.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
422pysamOfficialA+ · 97Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
423pytdcOfficialA · 79Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
424pytorch-lightningOfficialB · 49Deep learning framework (PyTorch Lightning). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard), distributed training (DDP, FSDP, DeepSpeed), for scalable neural network training.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
425pyzoteroOfficialA- · 72Interact with Zotero reference management libraries using the pyzotero Python client. Retrieve, create, update, and delete items, collections, tags, and attachments via the Zotero Web API v3. Use this skill when working with Zotero libraries programmatically, managing bibliographic references, exporting citations, searching library contents, uploading PDF attachments, or building research automation workflows that integrate with Zotero.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
426rdkitOfficialS · 99Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
427reactome-databaseOfficialB · 38Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
428receiving-code-reviewOfficialS · 99Use when receiving code review feedback, before implementing suggestions, especially if feedback seems unclear or technically questionable - requires technical rigor and verification, not performative agreement or blind implementationCoding AgentsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
429recovery-community-moderatorOfficialA+ · 95Trauma-informed AI moderator for addiction recovery communities. Applies harm reduction principles, honors 12-step traditions, distinguishes healthy conflict from abuse, detects crisis posts. Activate on 'community moderation', 'moderate forum', 'review post', 'check content', 'crisis detection'. NOT for legal documents (use recovery-app-legal-terms), app development (use domain skills), or therapy (use jungian-psychologist).Social MediaFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
430rehabilitation-analyzerOfficialS · 99分析康复训练数据、识别康复模式、评估康复进展,并提供个性化康复建议Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
431repro-enforcerOfficialS · 99Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
432requesting-code-reviewOfficialS · 99Use when completing tasks, implementing major features, or before merging to verify work meets requirementsCoding AgentsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
433research-lookupOfficialC · 0Look up current research information using Perplexity's Sonar Pro Search or Sonar Reasoning Pro models through OpenRouter. Automatically selects the best model based on query complexity. Search academic papers, recent studies, technical documentation, and general research information with citations.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
434scanpyOfficialS · 99Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
435scientific-brainstormingOfficialA+ · 98Research ideation partner. Generate hypotheses, explore interdisciplinary connections, challenge assumptions, develop methodologies, identify research gaps, for creative scientific problem-solving.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
436scientific-critical-thinkingOfficialA+ · 93Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
437scientific-problem-selectionOfficialA+ · 95This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this skill when users ask to pitch a new research idea, work through a project problem, evaluate project risks, plan research strategy, navigate decision trees, or get help choosing what scientific problem to work on. Typical requests include "I have an idea for a project", "I'm stuck on my research", "help me evaluate this project", "what should I work on", or "I need strategic advice about my research".ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
438scientific-schematicsOfficialC · 0Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review. Only regenerates if quality is below threshold for your document type. Specialized in neural network architectures, system diagrams, flowcharts, biological pathways, and complex scientific visualizations.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
439scientific-visualizationOfficialA+ · 97Create publication figures with matplotlib/seaborn/plotly. Multi-panel layouts, error bars, significance markers, colorblind-safe, export PDF/EPS/TIFF, for journal-ready scientific plots.Data VisualizationFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
440scientific-writingOfficialA+ · 93Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
441scikit-bioOfficialA+ · 98Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
442scikit-learnOfficialA · 79Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparameter tuning, preprocessing, or building ML pipelines. Provides comprehensive reference documentation for algorithms, preprocessing techniques, pipelines, and best practices.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
443scikit-survivalOfficialS · 99Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random Survival Forests, Gradient Boosting models, or Survival SVMs, evaluating survival predictions with concordance index or Brier score, handling competing risks, or implementing any survival analysis workflow with the scikit-survival library.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
444scrna-orchestratorOfficialC · 0Local Scanpy pipeline for single-cell RNA-seq QC, clustering, marker discovery, and optional two-group differential expression from raw-count .h5ad.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
445scveloOfficialA- · 72RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data. Complements Scanpy/scVI-tools for trajectory inference.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
446scvi-toolsOfficialS · 99This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
447seabornOfficialS · 100Statistical visualization with pandas integration. Use for quick exploration of distributions, relationships, and categorical comparisons with attractive defaults. Best for box plots, violin plots, pair plots, heatmaps. Built on matplotlib. For interactive plots use plotly; for publication styling use scientific-visualization.Data VisualizationFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
448seq-wranglerOfficialS · 99Sequence QC, alignment, and BAM processing. Wraps FastQC, BWA/Bowtie2, SAMtools for automated read-to-BAM pipelines.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
449shapOfficialA+ · 95Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learning model predictions, computing feature importance, generating SHAP plots (waterfall, beeswarm, bar, scatter, force, heatmap), debugging models, analyzing model bias or fairness, comparing models, or implementing explainable AI. Works with tree-based models (XGBoost, LightGBM, Random Forest), deep learning (TensorFlow, PyTorch), linear models, and any black-box model.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
450simpyOfficialB · 49Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems with processes, queues, resources, and time-based events such as manufacturing systems, service operations, network traffic, logistics, or any system where entities interact with shared resources over time.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
451simulation-validatorOfficialS · 99Validate simulations before, during, and after execution. Use for pre-flight checks, runtime monitoring, post-run validation, diagnosing failed simulations, checking convergence, detecting NaN/Inf, or verifying mass/energy conservation.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
452single-cell-downstream-analysisOfficialS · 99Checklist-style reference for OmicVerse downstream tutorials covering AUCell scoring, metacell DEG, and related exports.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
453single-cell-multi-omics-integrationOfficialS · 99Quick-reference sheet for OmicVerse tutorials spanning MOFA, GLUE pairing, SIMBA integration, TOSICA transfer, and StaVIA cartography.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
454single-cell-rna-qcOfficialA- · 74Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
455single-trajectory-analysisOfficialS · 99Guide to reproducing OmicVerse trajectory workflows spanning PAGA, Palantir, VIA, velocity coupling, and fate scoring notebooks.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
456sleep-analyzerOfficialS · 99分析睡眠数据、识别睡眠模式、评估睡眠质量,并提供个性化睡眠改善建议。支持与其他健康数据的关联分析。Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
457slurm-job-script-generatorOfficialA+ · 98Generate SLURM `sbatch` job scripts and sanity-check HPC resource requests (nodes, tasks, CPUs, memory, GPUs) for simulation runs. Use when preparing submission scripts, deciding MPI vs MPI+OpenMP layouts, standardizing `#SBATCH` directives, or debugging job launch configuration (`sbatch`/`srun`).Command LineFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
458speech-pathology-aiOfficialC · 9Expert speech-language pathologist specializing in AI-powered speech therapy, phoneme analysis, articulation visualization, voice disorders, fluency intervention, and assistive communication technology. Activate on 'speech therapy', 'articulation', 'phoneme analysis', 'voice disorder', 'fluency', 'stuttering', 'AAC', 'pronunciation', 'speech recognition', 'mellifluo.us'. NOT for general audio processing, music production, or voice acting coaching without clinical context.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
459statistical-analysisOfficialA+ · 94Statistical analysis toolkit. Hypothesis tests (t-test, ANOVA, chi-square), regression, correlation, Bayesian stats, power analysis, assumption checks, APA reporting, for academic research.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
460statsmodelsOfficialA+ · 94Statistical modeling toolkit. OLS, GLM, logistic, ARIMA, time series, hypothesis tests, diagnostics, AIC/BIC, for rigorous statistical inference and econometric analysis.Data Science ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
461string-databaseOfficialB+ · 53Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
462struct-predictorOfficialS · 99Local protein structure prediction with AlphaFold, Boltz, or Chai. Compare predicted structures, compute RMSD, visualise 3D models.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
463subagent-driven-developmentOfficialS · 99Use when executing implementation plans with independent tasks in the current sessionCoding AgentsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
464systematic-debuggingOfficialS · 99Use when encountering any bug, test failure, or unexpected behavior, before proposing fixesDeveloper ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
465tcm-constitution-analyzerOfficialA · 79分析中医体质数据、识别体质类型、评估体质特征,并提供个性化养生建议。支持与营养、运动、睡眠等健康数据的关联分析。Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
466test-driven-developmentOfficialS · 99Use when implementing any feature or bugfix, before writing implementation codeDeveloper ToolsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
467tiledbvcfOfficialA+ · 96Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, parallel queries, and export capabilities for population genomics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
468time-steppingOfficialA · 79Plan and control time-step policies for simulations. Use when coupling CFL/physics limits with adaptive stepping, ramping initial transients, scheduling outputs/checkpoints, or planning restart strategies for long runs.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
469tooluniverse-adverse-event-detectionOfficialA+ · 93Detect and analyze adverse drug event signals using FDA FAERS data, drug labels, disproportionality analysis (PRR, ROR, IC), and biomedical evidence. Generates quantitative safety signal scores (0-100) with evidence grading. Use for post-market surveillance, pharmacovigilance, drug safety assessment, adverse event investigation, and regulatory decision support.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
470tooluniverse-antibody-engineeringOfficialB · 49Comprehensive antibody engineering and optimization for therapeutic development. Covers humanization, affinity maturation, developability assessment, and immunogenicity prediction. Use when asked to optimize antibodies, humanize sequences, or engineer therapeutic antibodies from lead to clinical candidate.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
471tooluniverse-binder-discoveryOfficialA+ · 96Discover novel small molecule binders for protein targets using structure-based and ligand-based approaches. Creates actionable reports with candidate compounds, ADMET profiles, and synthesis feasibility. Use when users ask to find small molecules for a target, identify novel binders, perform virtual screening, or need hit-to-lead compound identification.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
472tooluniverse-cancer-variant-interpretationOfficialA+ · 97Provide comprehensive clinical interpretation of somatic mutations in cancer. Given a gene symbol + variant (e.g., EGFR L858R, BRAF V600E) and optional cancer type, performs multi-database analysis covering clinical evidence (CIViC), mutation prevalence (cBioPortal), therapeutic associations (OpenTargets, ChEMBL, FDA), resistance mechanisms, clinical trials, prognostic impact, and pathway context. Generates an evidence-graded markdown report with actionable recommendations for precision oncology. Use when oncologists, molecular tumor boards, or researchers ask about treatment options for specific cancer mutations, resistance mechanisms, or clinical trial matching.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
473tooluniverse-chemical-compound-retrievalOfficialB · 48Retrieves chemical compound information from PubChem and ChEMBL with disambiguation, cross-referencing, and quality assessment. Creates comprehensive compound profiles with identifiers, properties, bioactivity, and drug information. Use when users need chemical data, drug information, or mention PubChem CID, ChEMBL ID, SMILES, InChI, or compound names.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
474tooluniverse-chemical-safetyOfficialA+ · 97Comprehensive chemical safety and toxicology assessment integrating ADMET-AI predictions, CTD toxicogenomics, FDA label safety data, DrugBank safety profiles, and STITCH chemical-protein interactions. Performs predictive toxicology (AMES, DILI, LD50, carcinogenicity), organ/system toxicity profiling, chemical-gene-disease relationship mapping, regulatory safety extraction, and environmental hazard assessment. Use when asked about chemical toxicity, drug safety profiling, ADMET properties, environmental health risks, chemical hazard assessment, or toxicogenomic analysis.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
475tooluniverse-clinical-guidelinesOfficialS · 99Search and retrieve clinical practice guidelines across 12+ authoritative sources including NICE, WHO, ADA, AHA/ACC, NCCN, SIGN, CPIC, CMA, CTFPHC, GIN, MAGICapp, PubMed, EuropePMC, TRIP, and OpenAlex. Covers disease management, cardiology, oncology, diabetes, pharmacogenomics, and more. Use when users ask about clinical guidelines, treatment recommendations, standard of care, evidence-based medicine, or drug-gene dosing recommendations.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
476tooluniverse-clinical-trial-designOfficialA · 79Strategic clinical trial design feasibility assessment using ToolUniverse. Evaluates patient population sizing, biomarker prevalence, endpoint selection, comparator analysis, safety monitoring, and regulatory pathways. Creates comprehensive feasibility reports with evidence grading, enrollment projections, and trial design recommendations. Use when planning Phase 1/2 trials, assessing trial feasibility, or designing biomarker-driven studies.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
477tooluniverse-clinical-trial-matchingOfficialA · 79AI-driven patient-to-trial matching for precision medicine and oncology. Given a patient profile (disease, molecular alterations, stage, prior treatments), discovers and ranks clinical trials from ClinicalTrials.gov using multi-dimensional matching across molecular eligibility, clinical criteria, drug-biomarker alignment, evidence strength, and geographic feasibility. Produces a quantitative Trial Match Score (0-100) per trial with tiered recommendations and a comprehensive markdown report. Use when oncologists, molecular tumor boards, or patients ask about clinical trial options for specific cancer types, biomarker profiles, or post-progression scenarios.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
478tooluniverse-crispr-screen-analysisOfficialA+ · 98Comprehensive CRISPR screen analysis for functional genomics. Analyze pooled or arrayed CRISPR screens (knockout, activation, interference) to identify essential genes, synthetic lethal interactions, and drug targets. Perform sgRNA count processing, gene-level scoring (MAGeCK, BAGEL), quality control, pathway enrichment, and drug target prioritization. Use for CRISPR screen analysis, gene essentiality studies, synthetic lethality detection, functional genomics, drug target validation, or identifying genetic vulnerabilities.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
479tooluniverse-disease-researchOfficialA+ · 97Generate comprehensive disease research reports using 100+ ToolUniverse tools. Creates a detailed markdown report file and progressively updates it with findings from 10 research dimensions. All information includes source references. Use when users ask about diseases, syndromes, or need systematic disease analysis.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
480tooluniverse-drug-drug-interactionOfficialA+ · 97Comprehensive drug-drug interaction (DDI) prediction and risk assessment. Analyzes interaction mechanisms (CYP450, transporters, pharmacodynamic), severity classification, clinical evidence grading, and provides management strategies. Supports single drug pairs, polypharmacy analysis (3+ drugs), and alternative drug recommendations. Use when users ask about drug interactions, medication safety, polypharmacy risks, or need DDI assessment for clinical decision support.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
481tooluniverse-drug-researchOfficialA+ · 96Generates comprehensive drug research reports with compound disambiguation, evidence grading, and mandatory completeness sections. Covers identity, chemistry, pharmacology, targets, clinical trials, safety, pharmacogenomics, and ADMET properties. Use when users ask about drugs, medications, therapeutics, or need drug profiling, safety assessment, or clinical development research.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
482tooluniverse-drug-target-validationOfficialA+ · 97Comprehensive computational validation of drug targets for early-stage drug discovery. Evaluates targets across 10 dimensions (disambiguation, disease association, druggability, chemical matter, clinical precedent, safety, pathway context, validation evidence, structural insights, validation roadmap) using 60+ ToolUniverse tools. Produces a quantitative Target Validation Score (0-100) with GO/NO-GO recommendation. Use when users ask about target validation, druggability assessment, target prioritization, or "is X a good drug target for Y?"Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
483tooluniverse-epigenomicsOfficialA+ · 93Production-ready genomics and epigenomics data processing for BixBench questions. Handles methylation array analysis (CpG filtering, differential methylation, age-related CpG detection, chromosome-level density), ChIP-seq peak analysis (peak calling, motif enrichment, coverage stats), ATAC-seq chromatin accessibility, multi-omics integration (expression + methylation correlation), and genome-wide statistics. Pure Python computation (pandas, scipy, numpy, pysam, statsmodels) plus ToolUniverse annotation tools (Ensembl, ENCODE, SCREEN, JASPAR, ReMap, RegulomeDB, ChIPAtlas). Supports BED, BigWig, methylation beta-value matrices, Illumina manifest files, and multi-sample clinical data. Use when processing methylation data, ChIP-seq peaks, ATAC-seq signals, or answering questions about CpG sites, differential methylation, chromatin accessibility, histone marks, or epigenomic statistics.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
484tooluniverse-expression-data-retrievalOfficialS · 99Retrieves gene expression and omics datasets from ArrayExpress and BioStudies with gene disambiguation, experiment quality assessment, and structured reports. Creates comprehensive dataset profiles with metadata, sample information, and download links. Use when users need expression data, omics datasets, or mention ArrayExpress (E-MTAB, E-GEOD) or BioStudies (S-BSST) accessions.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
485tooluniverse-gwas-drug-discoveryOfficialA+ · 98Transform GWAS signals into actionable drug targets and repurposing opportunities. Performs locus-to-gene mapping, target druggability assessment, existing drug identification, safety profile evaluation, and clinical trial matching. Use when discovering drug targets from GWAS data, finding drug repurposing opportunities from genetic associations, or translating GWAS findings into therapeutic leads.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
486tooluniverse-gwas-finemappingOfficialA+ · 97Identify and prioritize causal variants at GWAS loci using statistical fine-mapping and locus-to-gene predictions. Computes posterior probabilities for causal variants, links variants to genes via L2G predictions, annotates functional consequences, and suggests validation strategies. Use when asked to fine-map GWAS loci, prioritize causal variants, identify credible sets, or link GWAS signals to causal genes.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
487tooluniverse-gwas-snp-interpretationOfficialB- · 36Interpret genetic variants (SNPs) from GWAS studies by aggregating evidence from multiple databases (GWAS Catalog, Open Targets Genetics, ClinVar). Retrieves variant annotations, GWAS trait associations, fine-mapping evidence, locus-to-gene predictions, and clinical significance. Use when asked to interpret a SNP by rsID, find disease associations for a variant, assess clinical significance, or answer questions like "What diseases is rs429358 associated with?" or "Interpret rs7903146".Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
488tooluniverse-gwas-study-explorerOfficialA+ · 97Compare GWAS studies, perform meta-analyses, and assess replication across cohorts. Integrates NHGRI-EBI GWAS Catalog and Open Targets Genetics to compare study designs, effect sizes, ancestry diversity, and heterogeneity statistics. Use when comparing GWAS studies for a trait, performing meta-analysis of genetic loci, assessing replication across cohorts, or exploring the genetic architecture of complex diseases.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
489tooluniverse-gwas-trait-to-geneOfficialA+ · 98Discover genes associated with diseases and traits using GWAS data from the GWAS Catalog (500,000+ associations) and Open Targets Genetics (L2G predictions). Identifies genetic risk factors, prioritizes causal genes via locus-to-gene scoring, and assesses druggability. Use when asked to find genes associated with a disease or trait, discover genetic risk factors, translate GWAS signals to gene targets, or answer questions like "What genes are associated with type 2 diabetes?"Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
490tooluniverse-image-analysisOfficialB+ · 55Production-ready microscopy image analysis and quantitative imaging data skill for colony morphometry, cell counting, fluorescence quantification, and statistical analysis of imaging-derived measurements. Processes ImageJ/CellProfiler output (area, circularity, intensity, cell counts), performs Dunnett's test, Cohen's d effect size, power analysis, Shapiro-Wilk normality tests, two-way ANOVA, polynomial regression, natural spline regression with confidence intervals, and comparative morphometry. Supports CSV/TSV measurement tables, multi-channel fluorescence data, colony swarming assays, and neuron counting datasets. Use when analyzing microscopy measurement data, colony area/circularity, cell count statistics, swarming assays, co-culture ratio optimization, or answering questions about imaging-derived quantitative data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
491tooluniverse-immune-repertoire-analysisOfficialA+ · 98Comprehensive immune repertoire analysis for T-cell and B-cell receptor sequencing data. Analyze TCR/BCR repertoires to assess clonality, diversity, V(D)J gene usage, CDR3 characteristics, convergence, and predict epitope specificity. Integrate with single-cell data for clonotype-phenotype associations. Use for adaptive immune response profiling, cancer immunotherapy research, vaccine response assessment, autoimmune disease studies, or repertoire diversity analysis in immunology research.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
492tooluniverse-immunotherapy-response-predictionOfficialA+ · 97Predict patient response to immune checkpoint inhibitors (ICIs) using multi-biomarker integration. Given a cancer type, somatic mutations, and optional biomarkers (TMB, PD-L1, MSI status), performs systematic analysis across 11 phases covering TMB classification, neoantigen burden estimation, MSI/MMR assessment, PD-L1 evaluation, immune microenvironment profiling, mutation-based resistance/sensitivity prediction, clinical evidence retrieval, and multi-biomarker score integration. Generates a quantitative ICI Response Score (0-100), response likelihood tier, specific ICI drug recommendations with evidence, resistance risk factors, and a monitoring plan. Use when oncologists ask about immunotherapy eligibility, checkpoint inhibitor selection, or biomarker-guided ICI treatment decisions.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
493tooluniverse-infectious-diseaseOfficialA+ · 97Rapid pathogen characterization and drug repurposing analysis for infectious disease outbreaks. Identifies pathogen taxonomy, essential proteins, predicts structures, and screens existing drugs via docking. Use when facing novel pathogens, emerging infections, or needing rapid therapeutic options during outbreaks.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
494tooluniverse-literature-deep-researchOfficialA+ · 98Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction. Creates a detailed report with mandatory completeness checklist, biological model synthesis, and testable hypotheses. For biological targets, resolves official IDs (Ensembl/UniProt), synonyms, naming collisions, and gathers expression/pathway context before literature search. Default deliverable is a report file; for single factoid questions, uses a fast verification mode and may include an inline answer. Use when users need thorough literature reviews, target profiles, or to verify specific claims from the literature.ResearchFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
495tooluniverse-metabolomicsOfficialA · 75Comprehensive metabolomics research skill for identifying metabolites, analyzing studies, and searching metabolomics databases. Integrates HMDB (220k+ metabolites), MetaboLights, Metabolomics Workbench, and PubChem. Use when asked to identify or annotate metabolites (HMDB IDs, chemical properties, pathways), retrieve metabolomics study information from MetaboLights (MTBLS*) or Metabolomics Workbench (ST*), search for studies by keywords or disease, or generate comprehensive metabolomics research reports.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
496tooluniverse-metabolomics-analysisOfficialS · 99Analyze metabolomics data including metabolite identification, quantification, pathway analysis, and metabolic flux. Processes LC-MS, GC-MS, NMR data from targeted and untargeted experiments. Performs normalization, statistical analysis, pathway enrichment, metabolite-enzyme integration, and biomarker discovery. Use when analyzing metabolomics datasets, identifying differential metabolites, studying metabolic pathways, integrating with transcriptomics/proteomics, discovering metabolic biomarkers, performing flux balance analysis, or characterizing metabolic phenotypes in disease, drug response, or physiological conditions.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
497tooluniverse-multi-omics-integrationOfficialS · 99Integrate and analyze multiple omics datasets (transcriptomics, proteomics, epigenomics, genomics, metabolomics) for systems biology and precision medicine. Performs cross-omics correlation, multi-omics clustering (MOFA+, NMF), pathway-level integration, and sample matching. Coordinates ToolUniverse skills for expression data (RNA-seq), epigenomics (methylation, ChIP-seq), variants (SNVs, CNVs), protein interactions, and pathway enrichment. Use when analyzing multi-omics datasets, performing integrative analysis, discovering multi-omics biomarkers, studying disease mechanisms across molecular layers, or conducting systems biology research that requires coordinated analysis of transcriptome, genome, epigenome, proteome, and metabolome data.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
498tooluniverse-multiomic-disease-characterizationOfficialA · 79Comprehensive multi-omics disease characterization integrating genomics, transcriptomics, proteomics, pathway, and therapeutic layers for systems-level understanding. Produces a detailed multi-omics report with quantitative confidence scoring (0-100), cross-layer gene concordance analysis, biomarker candidates, therapeutic opportunities, and mechanistic hypotheses. Uses 80+ ToolUniverse tools across 8 analysis layers. Use when users ask about disease mechanisms, multi-omics analysis, systems biology of disease, biomarker discovery, or therapeutic target identification from a disease perspective.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
499tooluniverse-pharmacovigilanceOfficialA+ · 97Analyze drug safety signals from FDA adverse event reports, label warnings, and pharmacogenomic data. Calculates disproportionality measures (PRR, ROR), identifies serious adverse events, assesses pharmacogenomic risk variants. Use when asked about drug safety, adverse events, post-market surveillance, or risk-benefit assessment.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
500tooluniverse-phylogeneticsOfficialA+ · 89Production-ready phylogenetics and sequence analysis skill for alignment processing, tree analysis, and evolutionary metrics. Computes treeness, RCV, treeness/RCV, parsimony informative sites, evolutionary rate, DVMC, tree length, alignment gap statistics, GC content, and bootstrap support using PhyKIT, Biopython, and DendroPy. Performs NJ/UPGMA/parsimony tree construction, Robinson-Foulds distance, Mann-Whitney U tests, and batch analysis across gene families. Integrates with ToolUniverse for sequence retrieval (NCBI, UniProt, Ensembl) and tree annotation. Use when processing FASTA/PHYLIP/Nexus/Newick files, computing phylogenetic metrics, comparing taxa groups, or answering questions about alignments, trees, parsimony, or molecular evolution.Biology Medicine and BioinformaticsFreedomIntelligence/OpenClaw-Medical-Skills · 0 installsFreedomIntelligence/OpenClaw-Medical-Skills0
Source repository