SKILL.md
Ontology Explorer
Goal
Enable an agent to understand, navigate, and query the structure of materials science ontologies without loading verbose OWL/XML files directly. Provides fast access to class hierarchies, property definitions, and domain-range relationships through pre-processed JSON summaries.
Requirements
- Python 3.8+
- No external dependencies (Python standard library only)
- Internet access required only for
owl_parser.pyandontology_summarizer.pywhen fetching remote OWL files
Inputs to Gather
| Input | Description | Example |
|---|---|---|
| Ontology name | Registered ontology to query | cmso |
| Class name | A specific class to inspect | Material, UnitCell |
| Property name | A specific property to look up | hasMaterial, hasSpaceGroupNumber |
| Search term | Keyword to search across labels | crystal, lattice |
| OWL source | Path or URL to an OWL/XML file (for parsing/summarizing) | https://raw.githubusercontent.com/OCDO/cmso/main/cmso.owl |
Decision Guidance
What do you need?
├── Understand overall ontology structure
│ └── class_browser.py --ontology cmso --list-roots
├── Inspect a specific class
│ └── class_browser.py --ontology cmso --class <name>
├── Find properties for a class
│ └── property_lookup.py --ontology cmso --class <name>
├── Look up a specific property
│ └── property_lookup.py --ontology cmso --property <name>
├── Search for a concept
│ ├── class_browser.py --ontology cmso --search <term>
│ └── property_lookup.py --ontology cmso --search <term>
├── Parse a new/updated OWL file
│ └── owl_parser.py --source <path-or-url>
└── Generate/refresh a summary JSON
└── ontology_summarizer.py --source <url> --output <path>
