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skills/K-Dense-AI/scientific-agent-skills/pufferlib

pufferlib

Official1
K-Dense-AI/scientific-agent-skills·Data Science Tools·Audit passed·Snapshot d8d4ddc1153e
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Summary

High-performance reinforcement learning framework optimized for speed and scale. Use when you need fast parallel training, vectorized environments, multi-agent systems, or integration with game environments (Atari, Procgen, NetHack). Achieves 2-10x speedups over standard implementations. For quick prototyping or standard algorithm implementations with extensive documentation, use stable-baselines3 instead.

SKILL.md

PufferLib

Use PufferLib with an explicit version profile. Upstream currently has two incompatible surfaces:

ProfileStatus on 2026-07-23Main use
pufferlib==3.0.0Latest stable PyPI release, published 2025-06-23Python/Gymnasium/PettingZoo emulation, pufferlib.vector, Torch PuffeRL
source 4.0Upstream default branch; not the latest stable PyPI artifactNative C Ocean environments, native CUDA trainer, optional Torch fallback

Do not combine 3.0 imports with 4.0 config/CLI examples. The 4.0 redesign removed the 3.0 emulation, vector, and pytorch modules from the current package tree.

Safe defaults

  1. Start with bundled synthetic, CPU-only, network-free tools.
  2. Do not import an arbitrary environment by dotted path. Bundled tools accept only allowlisted built-ins and slug identifiers.
  3. Do not install or execute an unreviewed environment package, native extension, ROM, map, checkpoint, or pickle file.
  4. Verify official source, immutable revision, licenses, checksums or attestations, and build hooks. Sandbox native builds and first execution.
  5. Cap steps, environments, agents, workers, threads, buffers, memory, disk, render size, and wall time.
  6. Keep training and evaluation environments/seeds separate.
  7. Default logging to local/none. External logging requires explicit opt-in, disclosure acknowledgment, and separate artifact-upload approval.
  8. Never pass W&B or Neptune credentials via CLI, INI, JSON, tags, run names, or logger configuration. Never print them.
  • Never dump all environment variables or recursively search for .env.
  • Hash checkpoint bytes before trusted, sandboxed loading; metadata inspection is not proof of safety.
  • First local checks

    All bundled CLIs are dependency-free and emit strict JSON:

    python3 scripts/env_template.py --help
    python3 scripts/env_contract_validator.py
    python3 scripts/benchmark_vectorization.py --backend serial
    python3 scripts/train_template.py
    python3 scripts/validate_plan.py
    python3 scripts/repro_plan.py
    

    Defaults are synthetic, deterministic, bounded, local, CPU-only, no-network, and dry-run where training would otherwise occur.

    Installation and provenance

    Published 3.0.0

    PyPI supplies only pufferlib-3.0.0.tar.gz:

    sha256: 7df3a3e3f5f894d78d2a1f5374097890aec01473183e748abefe4f3faa10eaa9
    Requires-Python: >=3.9
    

    After source/build review, create a pinned uv project:

    uv venv --python 3.11
    uv add --exact --no-sync "pufferlib==3.0.0"
    uv lock
    uv sync --frozen
    

    Commit pyproject.toml and uv.lock; verify the archive digest and every resolved dependency. The source build can compile native code and fetch build assets, so resolve/build in a sandbox without credentials or sensitive mounts. The uploaded metadata does not pin Torch or CUDA; do not claim a supported CUDA matrix that PyPI does not declare.

    Current 4.0 source

    The reviewed branch head on 2026-07-23 was:

    25647630e1b15330bb3153a5a0d3ff8d234c3acf
    

    Pin the commit, not branch 4.0:

    uv add --no-sync \
      "pufferlib @ git+https://github.com/PufferAI/PufferLib.git@25647630e1b15330bb3153a5a0d3ff8d234c3acf"
    uv lock
    

    The current package declares Python >=3.10 and Torch >=2.9. Upstream PufferTank currently uses Ubuntu 24.04, Python 3.12, and an NVIDIA CUDA 13.0.2/cuDNN development image with the cu130 Torch index, but does not pin the exact Torch wheel or all system packages. Treat it as a reference, not a complete lock. Never execute a remote installer directly from a pipe.

    Read references/training.md before any installation or build.

    Environment workflow

    1. Validate the contract

    Gymnasium reset returns (observation, info). Step returns:

    (observation, reward, terminated, truncated, info)
    

    Validate spaces, shapes, dtypes, finite rewards, booleans, reset-before-step, reset-after-end, seeding, and cleanup. terminated is an MDP terminal; truncated is an external cutoff such as a time limit. Preserve the distinction for bootstrapping and metrics.

    python3 scripts/env_contract_validator.py \
      --steps 64 --episodes 8 --seed 42
    

    2. Adapt only after review

    Published 3.0 uses explicit wrappers:

    import pufferlib.emulation
    
    wrapped = pufferlib.emulation.GymnasiumPufferEnv(reviewed_gymnasium_instance)
    

    For a reviewed PettingZoo Parallel environment:

    wrapped = pufferlib.emulation.PettingZooPufferEnv(reviewed_parallel_instance)
    

    There is no supported 3.0 pufferlib.emulate(...) shortcut matching the old skill. Read references/environments.md and references/integration.md.

    3. Native environments

    Published 3.0 PufferEnv requires single_observation_space, single_action_space, and num_agents before super().__init__(buf). It uses in-place vector buffers and returns separate terminal/truncation arrays plus a list of info dictionaries.

    Current 4.0 uses C bindings. Start from upstream ocean/squared (single-agent) or ocean/target (multi-agent), build one environment in local/sanitized mode, and verify every buffer size/type/index before optimization.

    Vectorization workflow

    Published 3.0:

    import pufferlib.vector
    
    vecenv = pufferlib.vector.make(
        reviewed_creator,
        backend=pufferlib.vector.Serial,
        num_envs=4,
        seed=42,
    )
    

    Move to Multiprocessing only after serial traces pass. Record num_envs, num_workers, batch_size, zero-copy mode, start method, agent count, masks, and actual returned shapes. For multi-agent environments, batch length is based on agent slots, not necessarily num_envs.

    Current 4.0 config instead uses:

    [vec]
    total_agents = 4096
    num_buffers = 2
    num_threads = 16
    

    Read references/vectorization.md. Benchmark fixed work with warmup and at least three repeats; report simulation and end-to-end training SPS separately. The bundled benchmark measures only its synthetic harness.

    Policy workflow

    Published 3.0 policies are Torch modules sized from single_observation_space/single_action_space. Stable recurrent composition uses encode_observations and decode_actions; structured emulation uses pufferlib.pytorch.nativize_dtype and nativize_tensor.

    Current 4.0 Torch fallback composes:

    pufferlib.models.Policy(encoder=encoder, decoder=decoder, network=network)
    

    It provides MLP, MinGRU, LSTM, and GRU network choices; --slowly selects this fallback instead of the native backend. Check output/state shapes, masks, finite values, gradients, and eager-versus-compiled behavior. See references/policies.md.

    Training and evaluation

    Published 3.0 trainer import:

    from pufferlib import pufferl
    
    trainer = pufferl.PuffeRL(train_config, vecenv, policy)
    

    Current 4.0 CLI:

    puffer train ENV_NAME
    puffer eval ENV_NAME --load-model-path EXACT_TRUSTED_PATH
    puffer sweep ENV_NAME
    

    Generate a plan instead of launching by default:

    python3 scripts/train_template.py \
      --profile pypi-3.0.0 \
      --environment synthetic \
      --device cpu \
      --total-timesteps 10000
    

    Validate a custom strict-JSON plan:

    python3 scripts/validate_plan.py --root . --config plan.json
    

    The schema rejects secret-bearing keys, unbounded resources, dotted environment paths, invalid vector divisibility, mixed-version options, and coupled train/eval seeds. See references/training.md.

    Logging

    PufferLib 3.0 exposes W&B and Neptune; current 4.0 CLI exposes W&B. Both are optional external services. They may transmit configuration, metrics, source metadata, hardware telemetry, output, and approved artifacts, with privacy, retention, access-control, and cost implications.

    • W&B credential: named environment variable WANDB_API_KEY.
    • Neptune credential: named environment variable NEPTUNE_API_TOKEN.
    • Never put values in arguments/config/logs.
    • Sanitize config keys before logging.
    • Keep source/model upload off unless explicitly approved.

    The planner requires both:

    python3 scripts/train_template.py \
      --logger wandb \
      --enable-external-logging \
      --acknowledge-external-disclosure
    

    It reports only the required variable name and never reads its value.

    Checkpoint workflow

    PufferLib 3.0 and the 4.0 Torch fallback use Torch serialization; current native 4.0 writes opaque .bin weights. PyTorch warns that untrusted models are programs and that torch.load uses unpickling.

    python3 scripts/inspect_checkpoint.py checkpoint.pt \
      --root . \
      --expected-sha256 0123456789abcdef0123456789abcdef0123456789abcdef0123456789abcdef
    

    The inspector hashes and classifies only. It does not call torch.load, import pickle/Torch, inspect archive members, or extract files. Verify source, license, architecture, environment revision, sidecar metadata, and checksum before any sandboxed load. Never use latest in a reproducible evaluation.

    Bundled files

    Scripts

    • scripts/env_template.py — deterministic synthetic Gymnasium-style template.
    • scripts/env_contract_validator.py — bounded contract and seed checks.
    • scripts/benchmark_vectorization.py — capped serial/spawn synthetic benchmark.
    • scripts/train_template.py — non-executing 3.0/4.0 training-plan generator.
    • scripts/validate_plan.py — strict config/resource/security validator.
    • scripts/inspect_checkpoint.py — metadata/hash inspection without deserialization.
    • scripts/repro_plan.py — separate-seed evaluation and benchmark plan.

    References

    • references/environments.md — Gymnasium, stable PufferEnv, emulation, native C.
    • references/vectorization.md — backends, shapes, start methods, benchmarks.
    • references/policies.md — stable/current policy contracts and state safety.
    • references/training.md — installs, config, CLI, PuffeRL, eval, logs, checkpoints.
    • references/integration.md — migration matrix, third-party and credential safety.

    Dated upstream sources

    • PyPI pufferlib 3.0.0 — released 2025-06-23; checked 2026-07-23.
    • PyPI 3.0.0 metadata — digest/dependencies; checked 2026-07-23.
    • PufferLib official docs — current 4.0 docs; checked 2026-07-23.
    • PufferLib source — default branch and implementation; checked 2026-07-23.
    • PufferTank 4.0 Dockerfile — CUDA/Python reference; checked 2026-07-23.
    • PufferLib 2.0 paper — Reinforcement Learning Journal, 2025; use only for its stated benchmarks.
    • PufferLib compatibility paper — submitted 2024-06-18; describes an earlier API/performance profile.

    Related skills

    liteparseadaptyvaeonanndataarbor