Wardn Hub
MCP ServersSkillsCategoriesAPI docsSubmit server
Submit server
Wardn HubTrusted MCP server directory.

Registry

  • MCP Servers
  • Skills
  • Categories

Resources

  • API docs
  • Score method

Contribute

  • Submit server
  • Advertise
© 2026 Wardn Hub
Wardn Hub
MCP ServersSkillsCategoriesAPI docsSubmit server
Submit server
skills/K-Dense-AI/scientific-agent-skills/dask

dask

Official1
K-Dense-AI/scientific-agent-skills·Data Science Tools·Review advised·Snapshot 7ddcec6cc0c9
Installs
0

Summary

Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For out-of-core analytics on single machine use vaex; for in-memory speed use polars.

SKILL.md

Dask

Overview

Dask is a Python library for parallel and distributed computing that enables three critical capabilities:

  • Larger-than-memory execution on single machines for data exceeding available RAM
  • Parallel processing for improved computational speed across multiple cores
  • Distributed computation supporting terabyte-scale datasets across multiple machines

Dask scales from laptops (processing ~100 GiB) to clusters (processing ~100 TiB) while maintaining familiar Python APIs.

Current upstream: dask 2026.3.0 (PyPI, March 2026). Docs: docs.dask.org. Since 2025.1.0, the expression-based DataFrame API with query planning is the only implementation — do not install dask-expr separately or set dataframe.query-planning: False.

Quick Start

Installation

uv pip install "dask>=2025.1"

For a typical pandas/NumPy workflow with the distributed scheduler and dashboard:

uv pip install "dask[complete]"

Remote object storage (S3, GCS, Azure):

uv pip install s3fs    # s3:// paths
uv pip install gcsfs   # gs:// paths

Requires Python 3.10+ (3.9 support dropped in 2024.12). DataFrame I/O requires PyArrow 16+ (as of dask 2026.1.2).

When to Use This Skill

This skill should be used when:

  • Process datasets that exceed available RAM
  • Scale pandas or NumPy operations to larger datasets
  • Parallelize computations for performance improvements
  • Process multiple files efficiently (CSVs, Parquet, JSON, text logs)
  • Build custom parallel workflows with task dependencies
  • Distribute workloads across multiple cores or machines
  • Core Capabilities

    Dask provides five main components, each suited to different use cases:

    1. DataFrames - Parallel Pandas Operations

    Purpose: Scale pandas operations to larger datasets through parallel processing.

    When to Use:

    • Tabular data exceeds available RAM
    • Need to process multiple CSV/Parquet files together
    • Pandas operations are slow and need parallelization
    • Scaling from pandas prototype to production

    Reference Documentation: For comprehensive guidance on Dask DataFrames, refer to references/dataframes.md which includes:

    • Reading data (single files, multiple files, glob patterns)
    • Common operations (filtering, groupby, joins, aggregations)
    • Custom operations with map_partitions
    • Performance optimization tips
    • Common patterns (ETL, time series, multi-file processing)

    Quick Example:

    import dask.dataframe as dd
    
    # Read multiple files as single DataFrame
    ddf = dd.read_csv('data/2024-*.csv')
    
    # Operations are lazy until compute()
    filtered = ddf[ddf['value'] > 100]
    result = filtered.groupby('category').mean().compute()
    

    Key Points:

    • Operations are lazy (build task graph) until .compute() called
    • Use map_partitions for efficient custom operations
    • Convert to DataFrame early when working with structured data from other sources

    2. Arrays - Parallel NumPy Operations

    Purpose: Extend NumPy capabilities to datasets larger than memory using blocked algorithms.

    When to Use:

    • Arrays exceed available RAM
    • NumPy operations need parallelization
    • Working with scientific datasets (HDF5, Zarr, NetCDF)
    • Need parallel linear algebra or array operations

    Reference Documentation: For comprehensive guidance on Dask Arrays, refer to references/arrays.md which includes:

    • Creating arrays (from NumPy, random, from disk)
    • Chunking strategies and optimization
    • Common operations (arithmetic, reductions, linear algebra)
    • Custom operations with map_blocks
    • Integration with HDF5, Zarr, and XArray

    Quick Example:

    import dask.array as da
    
    # Create large array with chunks
    x = da.random.random((100000, 100000), chunks=(10000, 10000))
    
    # Operations are lazy
    y = x + 100
    z = y.mean(axis=0)
    
    # Compute result
    result = z.compute()
    

    Key Points:

    • Chunk size is critical (aim for ~100 MB per chunk)
    • Operations work on chunks in parallel
    • Rechunk data when needed for efficient operations
    • Use map_blocks for operations not available in Dask

    3. Bags - Parallel Processing of Unstructured Data

    Purpose: Process unstructured or semi-structured data (text, JSON, logs) with functional operations.

    When to Use:

    • Processing text files, logs, or JSON records
    • Data cleaning and ETL before structured analysis
    • Working with Python objects that don't fit array/dataframe formats
    • Need memory-efficient streaming processing

    Reference Documentation: For comprehensive guidance on Dask Bags, refer to references/bags.md which includes:

    • Reading text and JSON files
    • Functional operations (map, filter, fold, groupby)
    • Converting to DataFrames
    • Common patterns (log analysis, JSON processing, text processing)
    • Performance considerations

    Quick Example:

    import dask.bag as db
    import json
    
    # Read and parse JSON files
    bag = db.read_text('logs/*.json').map(json.loads)
    
    # Filter and transform
    valid = bag.filter(lambda x: x['status'] == 'valid')
    processed = valid.map(lambda x: {'id': x['id'], 'value': x['value']})
    
    # Convert to DataFrame for analysis
    ddf = processed.to_dataframe()
    

    Key Points:

    • Use for initial data cleaning, then convert to DataFrame/Array
    • Use foldby instead of groupby for better performance
    • Operations are streaming and memory-efficient
    • Convert to structured formats (DataFrame) for complex operations

    4. Futures - Task-Based Parallelization

    Purpose: Build custom parallel workflows with fine-grained control over task execution and dependencies.

    When to Use:

    • Building dynamic, evolving workflows
    • Need immediate task execution (not lazy)
    • Computations depend on runtime conditions
    • Implementing custom parallel algorithms
    • Need stateful computations

    Reference Documentation: For comprehensive guidance on Dask Futures, refer to references/futures.md which includes:

    • Setting up distributed client
    • Submitting tasks and working with futures
    • Task dependencies and data movement
    • Advanced coordination (queues, locks, events, actors)
    • Common patterns (parameter sweeps, dynamic tasks, iterative algorithms)

    Quick Example:

    from dask.distributed import Client
    
    client = Client()  # Create local cluster
    
    # Submit tasks (executes immediately)
    def process(x):
        return x ** 2
    
    futures = client.map(process, range(100))
    
    # Gather results
    results = client.gather(futures)
    
    client.close()
    

    Key Points:

    • Requires distributed client (even for single machine)
    • Tasks execute immediately when submitted
    • Pre-scatter large data to avoid repeated transfers
    • ~1ms overhead per task (not suitable for millions of tiny tasks)
    • Use actors for stateful workflows

    5. Schedulers - Execution Backends

    Purpose: Control how and where Dask tasks execute (threads, processes, distributed).

    When to Choose Scheduler:

    • Threads (default): NumPy/Pandas operations, GIL-releasing libraries, shared memory benefit
    • Processes: Pure Python code, text processing, GIL-bound operations
    • Synchronous: Debugging with pdb, profiling, understanding errors
    • Distributed: Need dashboard, multi-machine clusters, advanced features

    Reference Documentation: For comprehensive guidance on Dask Schedulers, refer to references/schedulers.md which includes:

    • Detailed scheduler descriptions and characteristics
    • Configuration methods (global, context manager, per-compute)
    • Performance considerations and overhead
    • Common patterns and troubleshooting
    • Thread configuration for optimal performance

    Quick Example:

    import dask
    import dask.dataframe as dd
    
    # Use threads for DataFrame (default, good for numeric)
    ddf = dd.read_csv('data.csv')
    result1 = ddf.mean().compute()  # Uses threads
    
    # Use processes for Python-heavy work
    import dask.bag as db
    bag = db.read_text('logs/*.txt')
    result2 = bag.map(python_function).compute(scheduler='processes')
    
    # Use synchronous for debugging
    dask.config.set(scheduler='synchronous')
    result3 = problematic_computation.compute()  # Can use pdb
    
    # Use distributed for monitoring and scaling
    from dask.distributed import Client
    client = Client()
    result4 = computation.compute()  # Uses distributed with dashboard
    

    Key Points:

    • Threads: Lowest overhead (~10 µs/task), best for numeric work
    • Processes: Avoids GIL (~10 ms/task), best for Python work
    • Distributed: Monitoring dashboard (~1 ms/task), scales to clusters
    • Can switch schedulers per computation or globally

    Best Practices

    For comprehensive performance optimization guidance, memory management strategies, and common pitfalls to avoid, refer to references/best-practices.md. Key principles include:

    Start with Simpler Solutions

    Before using Dask, explore:

    • Better algorithms
    • Efficient file formats (Parquet instead of CSV)
    • Compiled code (Numba, Cython)
    • Data sampling

    Critical Performance Rules

    1. Don't Load Data Locally Then Hand to Dask

    # Wrong: Loads all data in memory first
    import pandas as pd
    df = pd.read_csv('large.csv')
    ddf = dd.from_pandas(df, npartitions=10)
    
    # Correct: Let Dask handle loading
    import dask.dataframe as dd
    ddf = dd.read_csv('large.csv')
    

    2. Avoid Repeated compute() Calls

    # Wrong: Each compute is separate
    for item in items:
        result = dask_computation(item).compute()
    
    # Correct: Single compute for all
    computations = [dask_computation(item) for item in items]
    results = dask.compute(*computations)
    

    3. Don't Build Excessively Large Task Graphs

    • Increase chunk sizes if millions of tasks
    • Use map_partitions/map_blocks to fuse operations
    • Check task graph size: len(ddf.__dask_graph__())

    4. Choose Appropriate Chunk Sizes

    • Target: ~100 MB per chunk (or 10 chunks per core in worker memory)
    • Too large: Memory overflow
    • Too small: Scheduling overhead

    5. Use the Dashboard

    from dask.distributed import Client
    client = Client()
    print(client.dashboard_link)  # Monitor performance, identify bottlenecks
    

    Common Workflow Patterns

    ETL Pipeline

    import dask.dataframe as dd
    
    # Extract: Read data
    ddf = dd.read_csv('raw_data/*.csv')
    
    # Transform: Clean and process
    ddf = ddf[ddf['status'] == 'valid']
    ddf['amount'] = ddf['amount'].astype('float64')
    ddf = ddf.dropna(subset=['important_col'])
    
    # Load: Aggregate and save
    summary = ddf.groupby('category').agg({'amount': ['sum', 'mean']})
    summary.to_parquet('output/summary.parquet')
    

    Unstructured to Structured Pipeline

    import dask.bag as db
    import json
    
    # Start with Bag for unstructured data
    bag = db.read_text('logs/*.json').map(json.loads)
    bag = bag.filter(lambda x: x['status'] == 'valid')
    
    # Convert to DataFrame for structured analysis
    ddf = bag.to_dataframe()
    result = ddf.groupby('category').mean().compute()
    

    Large-Scale Array Computation

    import dask.array as da
    
    # Load or create large array
    x = da.from_zarr('large_dataset.zarr')
    
    # Process in chunks
    normalized = (x - x.mean()) / x.std()
    
    # Save result (use mode= for overwrite; zarr_array_kwargs for compression)
    da.to_zarr(normalized, 'normalized.zarr', mode='w')
    

    Custom Parallel Workflow

    from dask.distributed import Client
    
    client = Client()
    
    # Scatter large dataset once
    data = client.scatter(large_dataset)
    
    # Process in parallel with dependencies
    futures = []
    for param in parameters:
        future = client.submit(process, data, param)
        futures.append(future)
    
    # Gather results
    results = client.gather(futures)
    

    Selecting the Right Component

    Use this decision guide to choose the appropriate Dask component:

    Data Type:

    • Tabular data → DataFrames
    • Numeric arrays → Arrays
    • Text/JSON/logs → Bags (then convert to DataFrame)
    • Custom Python objects → Bags or Futures

    Operation Type:

    • Standard pandas operations → DataFrames
    • Standard NumPy operations → Arrays
    • Custom parallel tasks → Futures
    • Text processing/ETL → Bags

    Control Level:

    • High-level, automatic → DataFrames/Arrays
    • Low-level, manual → Futures

    Workflow Type:

    • Static computation graph → DataFrames/Arrays/Bags
    • Dynamic, evolving → Futures

    Integration Considerations

    File Formats

    • Efficient: Parquet, HDF5, Zarr (columnar, compressed, parallel-friendly)
    • Compatible but slower: CSV (use for initial ingestion only)
    • For Arrays: HDF5, Zarr, NetCDF

    Conversion Between Collections

    # Bag → DataFrame
    ddf = bag.to_dataframe()
    
    # DataFrame → Array (for numeric data)
    arr = ddf.to_dask_array(lengths=True)
    
    # Array → DataFrame
    ddf = dd.from_dask_array(arr, columns=['col1', 'col2'])
    

    With Other Libraries

    • XArray: Wraps Dask arrays with labeled dimensions (geospatial, imaging)
    • Dask-ML: Machine learning with scikit-learn compatible APIs
    • Distributed: Advanced cluster management and monitoring

    Debugging and Development

    Iterative Development Workflow

    1. Test on small data with synchronous scheduler:
    dask.config.set(scheduler='synchronous')
    result = computation.compute()  # Can use pdb, easy debugging
    
    1. Validate with threads on sample:
    sample = ddf.head(1000)  # Small sample
    # Test logic, then scale to full dataset
    
    1. Scale with distributed for monitoring:
    from dask.distributed import Client
    client = Client()
    print(client.dashboard_link)  # Monitor performance
    result = computation.compute()
    

    Common Issues

    Memory Errors:

    • Decrease chunk sizes
    • Use persist() strategically and delete when done
    • Check for memory leaks in custom functions

    Slow Start:

    • Task graph too large (increase chunk sizes)
    • Use map_partitions or map_blocks to reduce tasks

    Poor Parallelization:

    • Chunks too large (increase number of partitions)
    • Using threads with Python code (switch to processes)
    • Data dependencies preventing parallelism

    Reference Files

    All reference documentation files can be read as needed for detailed information:

    • references/dataframes.md - Complete Dask DataFrame guide
    • references/arrays.md - Complete Dask Array guide
    • references/bags.md - Complete Dask Bag guide
    • references/futures.md - Complete Dask Futures and distributed computing guide
    • references/schedulers.md - Complete scheduler selection and configuration guide
    • references/best-practices.md - Comprehensive performance optimization and troubleshooting

    Load these files when users need detailed information about specific Dask components, operations, or patterns beyond the quick guidance provided here.

    Related skills

    liteparseadaptyvaeonanndataarbor